TABLE 4.
SNP simulation results
| True: | Balancing selection
|
Neutral
|
Directional selection
|
|||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Classified: | Bal. | Neut. | Direc. | Bal. | Neut. | Direc. | Bal. | Neut. | Direc. | |
| Pop-2 | 0 (0) | 100 (98) | 0 (2) | 0 (0) | 799 (743) | 1 (57) | 0 (0) | 86 (62) | 14 (38) | |
| Pop-6a | 58 (73) | 42 (26) | 0 (1) | 34 (44) | 751 (714) | 15 (42) | 0 (0) | 39 (29) | 61 (71) | |
| Pop-10 | 82 (85) | 18 (13) | 0 (2) | 31 (44) | 747 (719) | 22 (37) | 0 (0) | 18 (11) | 82 (89) | |
| Pop-20 | 97 (98) | 3 (2) | 0 (0) | 25 (40) | 756 (728) | 19 (32) | 0 (0) | 8 (7) | 92 (93) | |
| Fst-0.05 | 10 (25) | 90 (74) | 0 (1) | 10 (34) | 772 (728) | 18 (38) | 0 (0) | 27 (18) | 73 (82) | |
| Fst-0.10 | 33 (49) | 67 (50) | 0 (1) | 22 (39) | 763 (720) | 15 (41) | 0 (0) | 38 (28) | 62 (72) | |
| Fst-0.15a | 58 (73) | 42 (26) | 0 (1) | 34 (44) | 751 (714) | 15 (42) | 0 (0) | 39 (29) | 61 (71) | |
| Fst-0.25 | 62 (76) | 38 (23) | 0 (1) | 34 (51) | 756 (701) | 10 (48) | 0 (0) | 32 (17) | 68 (83) | |
| Size-15 | 32 (52) | 68 (47) | 0 (1) | 14 (33) | 772 (729) | 14 (38) | 0 (0) | 32 (25) | 68 (75) | |
| Size-30a | 58 (73) | 42 (26) | 0 (1) | 34 (44) | 751 (714) | 15 (42) | 0 (0) | 39 (29) | 61 (71) | |
| Size-50 | 61 (78) | 39 (22) | 0 (0) | 31 (51) | 741 (710) | 28 (39) | 0 (0) | 22 (17) | 78 (83) | |
| Size-100 | 61 (76) | 39 (24) | 0 (0) | 30 (52) | 745 (711) | 25 (37) | 0 (0) | 25 (22) | 75 (78) | |
Numbers of SNP loci simulated under (“true”) balancing selection, neutrality, and directional selection that were classified in each category using a reversible-jump cutoff of 0.86 (0.79) that give false-positive rates of 5% (10%) are shown. Bal., balancing selection; Neut., neutrality; Direc., directional selection.
a
These data sets represent the same reference data set that is replicated in the table to make comparisons between results.