Table 6.
Identification of transcripts encoding putative transcription factors in male strobilus of C. japonica
| Description of Pfam domains | Pfam accession | Number of C. japonica male strobilus transcripts |
| Zinc finger, C3HC4 type (RING finger) | PF00097 | 48 |
| Myb-like DNA-binding domain | PF00249 | 43 |
| AP2 domain | PF00847 | 18 |
| No apical meristem (NAM) protein; NAC domain | PF02365 | 12 |
| Homeobox domain | PF00046 | 11 |
| PHD-finger | PF00628 | 11 |
| SRF-type transcription factor; MADS box | PF00319 | 10 |
| Histone-like transcription factor (CBF/NF-Y) and archaeal histone | PF00808 | 7 |
| Helix-loop-helix DNA-binding domain | PF00010 | 6 |
| HSF-type DNA-binding | PF00447 | 6 |
| B-box zinc finger | PF00643 | 6 |
| Dof domain, zinc finger | PF02701 | 4 |
| WRKY DNA-binding domain | PF03106 | 3 |
| Response regulator receiver domain | PF00072 | 2 |
| bZIP transcription factor | PF00170 | 2 |
| GATA zinc finger | PF00320 | 2 |
| B3 DNA binding domain; ABI3/VP1 transcription factor | PF02362 | 2 |
| SBP domain | PF03110 | 2 |
| GRAS family transcription factor | PF03514 | 2 |
| ZF-HD protein dimerisation region | PF04770 | 2 |
| CCT motif; CO-like protein | PF06203 | 2 |
| Auxin response factor | PF06507 | 2 |
| ARID/BRIGHT DNA binding domain | PF01388 | 1 |
| CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B | PF02045 | 1 |
| TCP family transcription factor | PF03634 | 1 |
| CG-1 domain; CAMTA protein | PF03859 | 1 |
| YABBY protein | PF04690 | 1 |
| Plant protein of unknown function; BZR1/LAT61 family | PF05687 | 1 |
| Whirly transcription factor | PF08536 | 1 |