Table 2.
Nucleotide Positions and Anticodons (for tRNAs) for All Genes for Six New Beetle Species
| Gene | Strand | Anticodon | Tetraphalerus | Trachypachus | Sphaerius | Cyphon | Chaetosoma | Priasilpha |
| tRNA-I | + | GAU | 1–63 (0) | 1–64 (0) | 1–64 (0) | 1–64 (0) | 1–66 (0) | 1–66 (0) |
| tRNA-Q | − | UUG | 65–133 (1) | 70–138 (5) | 62–130 (−3) | 62–130 (−3) | 64–132 (−3) | 64–132 (−3) |
| tRNA-M | + | CAU | 138–207 (4) | 141–209 (2) | 132–202 (1) | 129–197 (−2) | 132–200 (−1) | 132–200 (−1) |
| nad2 | + | 208–1231 (0) | 210–1238 (0) | 203–1228 (0) | 198–1217 (0) | 201–1206 (0) | 201–1214 (0) | |
| tRNA-W | + | UCA | 1232–1296 (0) | 1240–1308 (1) | 1229–1296 (0) | 1395–1462 (177) | 1207–1269 (0) | 1215–1282 (0) |
| tRNA-C | − | GCA | 1289–1351 (−8) | 1354–1418 (45) | 1298–1360 (1) | 1455–1516 (−8) | 1274–1336 (4) | 1282–1343 (−1) |
| tRNA-Y | − | GUA | 1352–1417 (0) | 1431–1499 (12) | 1365–1432 (4) | 1516–1581 (−1) | 1336–1399 (−1) | 1344–1407 (0) |
| cox1 | + | 1419–2949 (1) | 1501–3031 (1) | 1434–2964 (1) | 1583–3113 (1) | 1401–2931 (1) | 1611–3144 (203) | |
| tRNA-L | + | UAA | 2950–3014 (0) | 3032–3097 (0) | 2965–3029 (0) | 3114–3177 (0) | 2932–2994 (0) | 3145–3209 (0) |
| cox2 | + | 3015–3687 (0) | 3101–3788 (3) | 3030–3711 (0) | 3178–3862 (0) | 2995–3682 (0) | 3210–3896 (0) | |
| tRNA-K | + | CUU | 3688–3758 (0) | 3789–3859 (0) | 3712–3782 (0) | 3863–3933 (0) | 3683–3752 (0) | 3898–3968 (1) |
| tRNA-D | + | GUC | 3758–3822 (−1) | 3860–3925 (0) | 3799–3865 (16) | 3935–4001 (1) | 3752–3813 (−1) | 3968–4036 (−1) |
| atp8 | + | 3823–3981 (0) | 3926–4090 (0) | 3866–4024 (0) | 4002–4163 (0) | 3897–4052 (83) | 4037–4192 (0) | |
| atp6 | + | 3978–4652 (−4) | 4087–4761 (−4) | 4021–4695 (−4) | 4160–4834 (−4) | 4049–4717 (−4) | 4189–4860 (−4) | |
| cox3 | + | 4642–5423 (−11) | 4762–5553 (0) | 4695–5482 (−1) | 4840–5619 (5) | 4717–5500 (−1) | 4862–5649 (1) | |
| tRNA-G | + | UCC | 5424–5488 (0) | 5560–5625 (6) | 5483–5546 (0) | 5620–5683 (0) | 5501–5563 (0) | 5650–5712 (0) |
| nad3 | + | 5489–5840 (0) | 5626–5977 (0) | 5547–5898 (0) | 5684–6035 (0) | 5564–5915 (0) | 5713–6064 (0) | |
| tRNA-A | + | UGC | 5841–5904 (0) | 5978–6042 (0) | 5899–5964 (0) | 6036–6103 (0) | 5916–5980 (0) | 6065–6130 (0) |
| tRNA-R | + | UCG | 5904–5970 (−1) | 6042–6106 (−1) | 5973–6037 (8) | 6104–6167 (0) | 5980–6042 (−1) | 6130–6189 (−1) |
| tRNA-N | + | GUU | 5968–6033 (−3) | 6110–6174 (3) | 6040–6105 (2) | 6168–6232 (0) | 6042–6107 (−1) | 6190–6254 (0) |
| tRNA-S | + | GCU/UCUa | 6035–6099 (1) | 6174–6242 (−1) | 6107–6171 (1) | 6233–6299 (0) | 6108–6166 (0) | 6255–6321 (0) |
| tRNA-E | + | UUC | 6101–6163 (1) | 6243–6308 (0) | 6174–6240 (2) | 6301–6367 (1) | 6167–6229 (0) | 6322–6386 (0) |
| tRNA-F | − | GAA | 6162–6227 (−2) | 6307–6373 (−2) | 6239–6306 (−2) | 6366–6432 (−2) | 6228–6290 (−2) | 6385–6449 (−2) |
| nad5 | − | 6228–7953 (0) | 6374–8102 (0) | 6307–8024 (0) | 6433–8155 (0) | 6291–8001 (0) | 6450–8163 (0) | |
| tRNA-H | − | GUG | 7951–8014 (−3) | 8103–8170 (0) | 8025–8089 (0) | 8156–8219 (0) | 8002–8065 (0) | 8164–8230 (0) |
| nad4 | − | 8015–9338 (0) | 8171–9509 (0) | 8090–9425 (0) | 8220–9549 (0) | 8066–9386 (0) | 8231–9560 (0) | |
| nad4l | − | 9332–9625 (−7) | 9503–9796 (−7) | 9419–9712 (−7) | 9549–9839 (−1) | 9389–9670 (2) | 9557–9838 (−4) | |
| tRNA-T | + | UGU | 9628–9689 (2) | 9799–9863 (2) | 9715–9779 (2) | 9842–9906 (2) | 9674–9735 (3) | 9843–9907 (4) |
| tRNA-P | − | UGG | 9690–9756 (0) | 9864–9930 (0) | 9780–9845 (0) | 9907–9972 (0) | 9736–9798 (0) | 9908–9973 (0) |
| nad6 | + | 9758–10273 (1) | 9932–10456 (1) | 9847–10356 (1) | 9974–10492 (1) | 9800–10288 (1) | 9975–10478 (1) | |
| cob | + | 10273–11408 (−1) | 10456–11590 (−1) | 10356–11490 (−1) | 10492–11626 (−1) | 10288–11422 (−1) | 10478–11615 (−1) | |
| tRNA-S | + | UGA | 11409–11474 (0) | 11591–11657 (0) | 11491–11557 (0) | 11627–11693 (0) | 11423–11489 (0) | 11616–11683 (0) |
| nad1 | − | 11493–12440 (18) | 11676–12626 (18) | 11580–12530 (22) | 11712–12662 (18) | 11507–12460 (17) | 11701–12651 (17) | |
| tRNA-L | − | UAG | 12442–12506 (1) | 12628–12691 (1) | 12532–12594 (1) | 12664–12728 (1) | 12462–12523 (1) | 12653–12717 (1) |
| rrnL | − | 12507–13828 (0) | 12692–14012 (0) | 12595–13909 (0) | 12729–14025 (0) | 12524–13805 (0) | 12718–14000 (0) | |
| tRNA-V | − | UAC | 13829–13898 (0) | 14013–14084 (0) | 13910–13980 (0) | 14026–14095 (0) | 13806–13870 (0) | 14001–14071 (0) |
| RrnS | − | 13899–14689 (0) | 14085–14872 (0) | 13981–14764 (0) | 14096–14876 (0) | 13871–14649 (0) | 14072–14859 (0) | |
| control | Not applicable | 14690–15689 (0) | 14873–15991 (0)b | 14765–15735 (0)b | 14877–15919 (0) | 14650–15511 (0)b | 14860–16887 (0)b |
NOTE.—Numbers in parenthesis represent the number of intergenic nucleotides before the gene starts.
a
This tRNA-S has a UCU anticodon for Cyphon, Chaetosoma, and Priasilpha and a GCU anticodon for Tetraphalerus, Trachypachus, and Sphaerius.
b
Incomplete control region.