Table 5.
Results Comparing COVE's Default CM versus Beetle-Specific CM for tRNA-Ser(AGN) Using tRNAscan-SE
| Default CM |
Specific CM |
Published |
||||||||
| Organism | Start | End | Score | Start | End | Score | Start | End | Classification | Reference |
| Tribolium castaneum | — | — | — | 6077 | 6135 | 33.69 | 6077 | 6135 | Coleoptera | Friedrich and Muqim (2003) |
| Pyrophorus divergens | — | — | — | 6048 | 6114 | 61.33 | 6048 | 6114 | Coleoptera | Arnoldi et al. (2007) |
| Drosophila yakuba | 6199 | 6268 | 9.38 | 6200 | 6267 | 48.97 | 6200 | 6267 | Diptera | Clary and Wolstenholme (1985) |
| Culicoides arakawae | — | — | — | 7975 | 8040 | 32.75 | 7985 | 8040 | Diptera | NA |
| Adoxophyes honmai | — | — | — | 6180 | 6246 | 50.12 | 6180 | 6246 | Lepidoptera | Lee et al. (2006) |
| Bombyx mori | 927 | 995 | 21.56 | 928 | 994 | 49.94 | 928 | 994 | Lepidoptera | NA |
| Locusta migratoria | 6115 | 6183 | 5.02 | 6116 | 6182 | 36.25 | 6116 | 6182 | Orthoptera | Flook et al. (1995) |
| Gryllotalpa orientalis | 6062 | 6130 | 8.96 | 6063 | 6129 | 55.45 | 6063 | 6129 | Orthoptera | Kim et al. (2005) |
| Apis mellifera | 103 | 166 | 3.5 | 117 | 177 | 25.1 | 116 | 178 | Hymenoptera | Crozier RH and Crozier YC (1993) |
| Philaenus spumarius | — | — | — | 5992 | 6054 | 34.77 | 5991 | 6055 | Hemiptera | Stewart and Beckenbach (2005) |
| Additional coleopterans | ||||||||||
| Hydroscapha | 6086 | 6154 | 9.27 | 6087 | 6153 | 65.84 | NA | Coleoptera | NA | |
| Necrophila | — | — | — | 6082 | 6148 | 61.47 | NA | Coleoptera | NA | |
| Naupactus | — | — | — | 6053 | 6121 | 35.52 | NA | Coleoptera | NA | |
| Calosoma | 6229 | 6297 | 7.6 | 6230 | 6296 | 69.05 | NA | Coleoptera | NA | |
| Rhopaea | — | — | — | 6081 | 6147 | 65.97 | NA | Coleoptera | NA | |
NOTE.—Dashes (—) indicate that tRNAscan-SE with the default CM did not find tRNA-Ser(AGN). NA, not applicable.