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. 2008 Aug 27;21(11):639–644. doi: 10.1093/protein/gzn039

Table I.

The performance of CSS-Palm 2.0 was greatly improved by matrix mutation (MaM)

CSS-Palm 2.0 Threshold Leave-one-out
New data set
Ac (%) Sn (%) Sp (%) MCC (%) Ac (%) Sn (%) Sp (%) MCC
Before MaMa High 88.68 77.19 91.30 0.6495 89.00 56.60 93.82 0.5084
Medium 82.38 82.89 82.26 0.5541 81.91 69.81 83.71 0.4256
Low 69.43 87.83 65.22 0.4153 71.88 75.47 71.35 0.3303
After MaMb High 89.60 77.19 92.43 0.6709 89.49 56.60 94.38 0.5227
Medium 85.92 82.89 86.61 0.6142 86.31 73.58 88.20 0.5207
Low 77.00 87.83 74.52 0.5024 76.28 81.13 75.56 0.4089

Both of the leave-one-out validation and the performance on the new data set were calculated and shown.

aPerformance before MaM.

bThe performance after MaM.