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. Author manuscript; available in PMC: 2009 Sep 1.
Published in final edited form as: Bone. 2008 May 9;43(3):511–520. doi: 10.1016/j.bone.2008.04.021

Table 1.

Log2 Ratio of 33 genes showing differential expression in PC and RZ by two-way ANOVA and Expression level cutoff of 5 times changed. Red indicates presence in positive 99.9% confidence level while green indicates presence in negative 99.9% confidence level.

33 Genes by 2-Way ANOVA Showing Differential Expression in RZ and PC
99.9% Cl 99.9% Cl
Mean Log2 0.01 0.02 0.03 0.00 0.01 0.01
StDev 0.71 0.68 0.57 0.56 0.52 0.57
+99.9 CL 2.42 2.30 1.97 1.89 1.77 1.93
# Incr 99.9CL 384 495 122 321 355 308
−99.9 CL −1.38 −1.31 −1.10 −1.09 −1.02 −1.11
# Decr 99.9CL 618 303 1112 781 496 715
Log2 RZ/PZ Log2 PC/PZ
Probe ID Gene Name Gene Symbol 7 days 11days 16 days 7 days 11days 16 days
1388204_at --- Mmp13 7.43 6.69 4.55 4.42 0.85 −1.46
1368416_at integrin binding sialoprotein Ibsp 5.88 7.37 4.62 3.95 6.43 1.59
1370864_at procollagen, type 1, alpha 1 Col1a1 4.26 6.87 6.02 3.91 4.83 6.41
1398275_at matrix metallopeptidase 9 Mmp9 6.32 4.89 1.97 0.87 −0.25 0.62
1370959_at procollagen, type III, alpha 1 Col3a1 3.79 1.03 0.58 4.92 2.84 6.15
1393756_at dentin matrix protein 1 Dmp1 3.71 5.87 3.44 −0.27 1.15 2.75
1370155_at procollagen, type I, alpha 2 Col1a2 5.65 5.85 2.56 4.42 2.63 5.81
1370895_at procollagen, type V, alpha 2 Col5a2 4.09 4.68 3.35 4.25 4.84 5.50
1387029_at complement component factor H Cfh 5.13 5.44 3.22 3.90 2.60 4.91
1370941_at platelet derived growth factor receptor, alpha polypeptide Pdgfra 3.02 2.99 2.07 3.02 2.81 4.48
1382778_at Dual specificity phosphatase 6 Dusp6 2.27 4.28 2.66 0.65 2.38 −1.14
1373911_at periostin, osteoblast specific factor Postn −0.22 0.63 0.33 3.09 1.56 3.96
1371571_at amyloid beta (A4) precursor protein App 2.57 1.75 −0.01 3.95 2.92 1.90
1371419_at spectrin beta 2 Spnb2 3.74 3.40 1.45 1.64 0.15 0.51
1368145_at Purkinje cell protein 4 Pcp4 3.41 0.40 0.59 3.66 2.33 2.64
1390450_a_at osteoglycin (predicted) Ogn 2.72 2.45 0.03 2.95 3.22 3.40
1368806_at selenoprotein P, plasma, 1 Sepp1 2.84 3.28 1.49 1.98 0.87 2.33
1383916_at T-box 15 Tbx15 2.09 1.85 0.40 1.77 2.33 2.86
1389562_at SET binding protein 1 Setbp1 1.10 0.00 0.12 2.47 1.43 2.82
1391537_at similar to SERTA domain containing 4 RGD1565408 2.22 −0.05 0.55 2.02 0.01 2.80
1373951_at Protein kinase, cAMP dependent regulatory, type I, alpha Prkar1a 0.98 2.77 0.33 1.39 2.73 1.43
1378988_at LPS-responsive beige-like anchor Lrba 1.94 0.20 0.06 2.63 0.40 0.63
1383573_at Serologically defined colon cancer antigen 33 Sdccag33 −0.26 1.13 0.93 1.73 1.72 2.12
1384195_at --- LOC680866 0.75 0.91 −1.73 1.45 1.87 0.70
1387076_at hypoxia inducible factor 1, alpha subunit Hif1a 0.15 1.35 −1.21 1.15 1.86 0.73
1367668_a_at stearoyl-Coenzyme A desaturase 2 Scd2 0.53 1.86 −2.01 0.22 1.29 −0.90
1389330_at similar to cDNA sequence BC017158 RGD1310127 1.75 0.75 0.74 0.08 0.11 −0.47
1372525_at FK506 binding protein 14 Fkbp14 1.62 0.93 −0.36 1.31 0.46 1.37
1388318_at phosphoglycerate kinase 1 Pgk1 1.17 1.58 −1.56 0.74 0.64 −0.52
1370869_at branched chain aminotransferase 1, cytosolic Bcat1 0.51 0.94 −1.43 0.25 0.58 1.28
1391279_at Scinderin Scin 0.90 −0.17 −0.94 −0.27 −0.20 0.80
1372897_at hypothetical gene supported by NM_175869 LOC497831 −0.80 0.75 −2.12 −0.16 0.23 −0.73
1376804_at similar to Myosin VI RGD1560646 −0.60 −0.23 −1.36 −0.54 −0.89 −2.03
Falls within +99.9% Cl
Falls within −99.9% Cl