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. Author manuscript; available in PMC: 2008 Oct 20.
Published in final edited form as: J Am Chem Soc. 2006 Oct 4;128(39):12766–12777. doi: 10.1021/ja060830y

Figure 1.

Figure 1

Representative structure of a PDZ domain in complex with its target peptide. (a) Ribbon representation of the crystal structure of PDZ3 of PSD-95 in complex with a peptide in its binding site 3.

The peptide is represented in green and the C-terminus of the peptide is indicated by P0 (b) Molecular surface representation of PDZ3 of PSD-95 with basic residues in blue, acidic residues in red, polar residues in pink and hydrophobic residues in green. The binding pocket for the peptide is indicated by a black circle. Figures created using VMD 92.