TABLE 1.
Feature | Value |
---|---|
Total size (bases) | 5,898,676 |
Chromosome | 5,200,264 |
Plasmid 1 (pPol360) | 360,405 |
Plasmid 2 (pPol338) | 338,007 |
Gene density (no. of genes per kb) | 0.944 |
Avg gene length (bases) | 931 |
G+C% | 61.97 |
No. of protein-coding genes | 5,569 |
No. of genes with function prediction | 4,099 |
No. of conserved hypothetical genes | 1,388 |
No. of hypothetical genes (ORFans) | 82 |
No. of pseudogenes | 116 |
Coding region (%) | 99.2 |
rRNA | 1 operon, arranged 16S-tRNAIle-tRNAAla-23S-5S |
tRNA | 44 |
tmRNA | 1 |
Putative mobile genetic elements (no.) | |
Plasmids | 2 |
Transposases | 55 |
Phage | 1 |
Genomic islands | 8 |
Retrons | 6 |
Inteins | 2 |
Xenobiotic/hydrocarbon metabolism | |
Total monooxygenases | 16 |
Total no. of P450s | 4 |
Total no. of dioxygenases | 43 |
Total no. of glutathione S-transferases | 21 |
Total no. of hydrolases | 111 |
Total no. of hydratases | 27 |
Total no. of dehalogenases | 9 |
Derived, in part, from the DOE-JGI IMG server (http://img.jgi.doe.gov).