Table II.
Information about Assays for SNP Analyzed in this Study
| SNP marker | Approximate location | Type of assay | Assay ID |
|---|---|---|---|
| FGFR1 | |||
| rs13317 | In FGFR1 | TaqMan ODa | C_1358324_10 |
| rs6996321 | In FGFR1 | TaqMan OD | C_2080144_10 |
| rs10958704 | 2 kb 5′ of FGFR1 | TaqMan OD | C_2080139_10 |
| rs881301 | 7 kb 5′ of FGFR1 | TaqMan OD | C_8844845_10 |
| IRF6 | |||
| rs2073487 | In IRF6 | TaqMan OD | C_2500179_1 |
| rs861019 | In IRF6 | TaqMan BDb | NA |
| rs764093 | In IRF6 | TaqMan OD | C_2500165_10 |
| rs2235375 | In IRF6 | TaqMan BD | NA |
| rs17015215 (V274I) | In IRF6 | Kinetic PCR | See below |
| rs7802 | In IRF6 | TaqMan BD | NA |
| hCV16191297 | 60 kb 3′ of IRF6 | TaqMan BD | NA |
| hCV2502441 | 90 kb 3′ of IRF6 | TaqMan BD | NA |
| rs2235543 | 100 kb 3′ of IRF6 | TaqMan BD | NA |
| hCV2501174 | 200 kb 3′ of IRF6 | TaqMan BD | NA |
For V274I: Common primer sequence: CAGACCATGACCGTGAGCAA.
V-specific primer: TGCTCAGGACCTGGGAATTTGTC.
I-specific primer: TATGCTCAGGACCTGGGAATTTTTAT.
NA = not available.
a
Assay-on-demand.
b
Assay-by-design.