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. Author manuscript; available in PMC: 2008 Oct 21.
Published in final edited form as: J Phys Chem C Nanomater Interfaces. 2008;112(37):14297–14305. doi: 10.1021/jp803917t

Table 3.

Vertical separation (r/Å), dipole moment (D/Debye) and binding energy (ΔEint/kcal/mol) of the stacking complex of nucleobases with (5,5) and (10,0) SWCNTs predicted by MPWB1K/cc-pVDZ, and binding energy corrected by MP2/6-311++G(d,p)//MPWB1K/cc-pVDZ. The symbol A+(5,5)_S1 represents the stacking configuration S1 of A with (5,5), and so on.

MPBB1K/cc-pVDZ MP2/6-311++G**/MPWB1K/cc-pVDZ)
Stacking complex r D ΔEinta ΔEint (HF) ΔEint ΔEbinsol qb
A+(5,5)_S1:C=C bridge 3.3 2.4 −5.4 8.1 −12.6 −10.6 −0.14
A+(5,5)_S2: C-η6, N-η6 3.3 3.0 −5.6 8.5 −13.0 −11.1 −0.12
A+(5,5)_S3: undisplaced 3.4 2.7 −1.1 7.3 −11.1 −9.8 −0.12
A+(5,5)_S4: C-η6, 2N-η6 3.4 3.9 −6.6 6.1 −13.3 −10.7 −0.14
A+(10,0)_S1: C-η6 3.2 3.1 −5.8 7.9 −13.6 −10.9 −0.12
A+(10,0)_S2: undisplaced 3.4 3.5 −4.7 6.5 −12.6 −9.9 −0.11
A+(10,0)_S3: C=C bridge 3.2 3.3 −5.3 6.9 −13.4 −10.5 −0.12
A+(10,0)_S4: C-η6 3.2 3.4 −6.3 6.9 −13.8 −10.7 −0.13
G+(5,5)_S1: undisplaced 3.4 6.4 −7.4 5.0 −13.4 −9.8 −0.14
G+(5,5)_S2: C-η6 3.2 6.1 −8.6 8.3 −13.9 −11.3 −0.13
G+(5,5)_S3: 3 N-η6 3.3 7.1 −10.0 5.5 −14.3 −9.5 −0.17
G+(5,5)_S4: C=C bridge 3.3 6.3 −8.9 7.3 −14.0 −11.0 −0.13
G+(10,0)_S1: C- η6 3.4 5.6 -5.1 8.0 −13.2 −10.1 −0.14
G+(10,0)_S2: undisplaced 3.3 5.4 −4.8 7.4 −13.4 −9.2 −0.14
G+(10,0)_S3: N- η6 3.2 5.6 −7.9 5.5 −14.6 −10.0 −0.14
G+(10,0)_S4: C=C bridge 3.3 5.4 −5.8 5.5 −13.3 −9.4 −0.13
T+(5,5)_S1: undisplaced 3.7 4.7 −2.4 0.7 −7.7 −0.14
T+(5,5)_S2: slightly displaced 3.7 4.4 −2.9 1.1 −8.4 −6.8 −0.15
T+(5,5)_S3: N- η6 3.5 4.0 −3.2 4.4 −9.1 −7.5 −0.13
T+(5,5)_S4: N- η6 3.3 4.4 −5.6 4.0 −10.4 −7.6 −0.17
T+(5,5)_S5: C=C bridge, N- η6 3.3 4.4 −6.9 5.2 −12.4 −9.9 −0.17
T+(5,5)_S6: C-N and C=C bridge 3.3 4.1 −4.5 6.6 −10.3 −8.6 −0.14
T+(10,0)_S1: undisplaced 3.3 3.8 −5.3 6.0 −11.5 −8.7 −0.15
T+(10,0)_S2: N- η6 3.2 3.9 −5.3 6.3 −11.1 −8.6 −0.14
T+(10,0)_S3: C- η6 3.3 3.9 −7.1 3.4 −12.5 −9.5 −0.15
T+(10,0)_S4: C=C bridge 3.3 3.8 −6.3 4.3 −12.2 −9.3 −0.15
C+(5,5)_S1: C-C bridge 3.6 5.9 −6.4 0.5 −9.3 −6.0 −0.12
C+(5,5)_S2: undisplaced 3.5 5.6 −5.9 0.1 −8.8 −5.5 −0.12
C+(5,5)_S3: N- η6 3.3 5.2 −7.1 5.9 −10.7 −7.1 −0.12
C+(5,5)_S4: C-N and C=C bridge 3.2 5.4 −6.8 6.4 −10.2 −6.9 −0.12
C+(5,5)_S5: 2 C- η6 3.3 5.8 −7.7 5.3 −11.1 −7.0 −0.12
C+(10,0)_S1: C=C bridge 3.4 6.1 −6.2 2.1 −10.8 −8.5 −0.12
C+(10,0)_S2: C-N bridge 3.4 5.2 −4.1 5.6 −9.2 −6.3 −0.12
C+(10,0)_S3: undisplaced 3.4 5.6 −3.4 4.2 −9.1 −0.11
C+(10,0)_S4: C- η6 3.3 5.9 −6.0 3.3 −11.2 −7.5 −0.12
C+(10,0)_S5: N- η6 3.2 5.1 −6.2 5.3 −11.3 −7.2 −0.12
a

binding energy without BSSE

b

q, charge (e) carried by nucleobases