Table 1.

Statistical significance of the branch-site analysis LRTs after multiple corrections using Rom's procedure and the Bonferroni correction.

Cluster	Lineage Tested	p-value of LRT	Rom's Procedure critical value	Bonferroni critical value
FoxA	FoxA1	0.62	0.0127	0.0125
	FoxA2	0.0634	0.0169	0.0125
	FoxA3	0.0032	0.025	0.0125
	Protostomia	< 0.0001	0.05	0.0125
FoxD	FoxD1	1	0.0102	0.01
	FoxD4	0.0973	0.0127	0.01
	FoxD1/2	0.0347	0.0169	0.01
	FoxD1/2/4	0.0234	0.025	0.01
	FoxD2	< 0.0001	0.05	0.01
FoxO	FoxO4	0.2628	0.0169	0.0167
	FoxO1	0.109	0.025	0.0167
	FoxO3	0.0177	0.05	0.0167
FoxP	FoxP2	1	0.05	0.05

Critical values of statistically significant results are in boldface.