Table 3.

Comparison of the number of known complexes matched by the predicted clusters generated by IPCA and other previous algorithms

Overlapping Score Threshold	Algorithms
	IPCA	DPClus(Ov)	CFinder	LCMA	MCODE	RNSC	STM
	Tin = 0.9	CPin = 0.5	k = 3	NA = 0.4	V WP = 0.1	K = 1200	No Merging
	SP ≤ 2	Din = 0.9			Fluff = 0
OS ≥ 0.1	202	191	77	136	60	170	116
OS ≥ 0.2	165	128	54	105	35	115	57
OS ≥ 0.3	116	85	42	89	27	92	26
OS ≥ 0.4	104	74	33	74	24	71	18
OS ≥ 0.5	83	52	25	55	17	52	13
OS ≥ 0.6	67	41	19	45	13	26	10
OS ≥ 0.7	42	25	13	26	11	17	6
OS ≥ 0.8	36	20	7	20	8	11	5
OS ≥ 0.9	29	15	5	13	4	6	4
OS = 1.0	28	15	5	12	4	6	4