Table 3.
List of query sequences used in different performance comparisons
| Accession number | Query Sequence Length | Comparison w/SSEARCH | Comparison w/Striped SW | Comparison w/CUDA |
| O29181 | 63 | √ | √ | √ |
| P03630 | 127 | √ | √ | √ |
| P02232 | 143 | √ | ||
| P05013 | 189 | √ | ||
| P14942 | 222 | √ | ||
| P00762 | 246 | √ | ||
| P53765 | 255 | √ | √ | √ |
| Q8ZGB4 | 361 | √ | √ | √ |
| P10318 | 362 | √ | ||
| P07327 | 374 | √ | ||
| P01008 | 464 | √ | ||
| P10635 | 497 | √ | ||
| P58229 | 511 | √ | √ | |
| P25705 | 553 | √ | ||
| P42357 | 657 | √ | √ | √ |
| P21177 | 729 | √ | √ | √ |
| Q38941 | 850 | √ | √ | √ |
| O60341 | 852 | √ | √ | √ |
List of query sequences, as well as their respective accession number, used in different performance comparisons with other publicly available implementations of SW-based protein database scanning, namely SSEARCH, Striped Smith-Waterman and CUDA.