Table 3.
OtsClock1b PolyQ variant frequencies in 42 populations of Chinook salmon (O. tshawytscha). Latitude/longitude (degrees), number of alleles (N),and run time (autumn, A; winter, W; spring, S; summer, Su) are listed for each population.
| population | run time | °latitude | °longitude | N | 293 | 329 | 335 | 338 | 356 | 359 | 362 | 383 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Montana River, AK | Su | 62.06 | 150.04 | 40 | 0.00 | 0.00 | 0.50 | 0.00 | 0.00 | 0.50 | 0.00 | 0.00 |
| Situk River, AK | Su | 59.45 | 139.57 | 40 | 0.00 | 0.00 | 0.47 | 0.00 | 0.00 | 0.53 | 0.00 | 0.00 |
| Big Boulder Creek, AK | Su | 59.43 | 136.19 | 86 | 0.00 | 0.00 | 0.69 | 0.00 | 0.00 | 0.24 | 0.00 | 0.07 |
| Klukshu River, AK | Su | 59.17 | 138.53 | 82 | 0.00 | 0.00 | 0.41 | 0.00 | 0.00 | 0.59 | 0.00 | 0.00 |
| Nakina River, AK | Su | 58.42 | 133.99 | 88 | 0.00 | 0.00 | 0.51 | 0.00 | 0.00 | 0.40 | 0.00 | 0.09 |
| King Salmon River, AK | Su | 57.68 | 133.17 | 96 | 0.00 | 0.00 | 0.40 | 0.00 | 0.00 | 0.47 | 0.00 | 0.13 |
| Andrews Creek, AK | Su | 56.67 | 132.25 | 86 | 0.00 | 0.00 | 0.46 | 0.00 | 0.00 | 0.42 | 0.00 | 0.12 |
| Clear Creek, AK | Su | 56.08 | 131.07 | 64 | 0.00 | 0.00 | 0.64 | 0.00 | 0.00 | 0.23 | 0.00 | 0.13 |
| Chikamin, AK | Su | 55.82 | 130.89 | 90 | 0.00 | 0.00 | 0.66 | 0.00 | 0.00 | 0.03 | 0.00 | 0.31 |
| Keta River, AK | Su | 55.34 | 130.48 | 80 | 0.00 | 0.00 | 0.82 | 0.00 | 0.00 | 0.09 | 0.00 | 0.09 |
| Salmon River, BC | S | 54.07 | 122.55 | 88 | 0.00 | 0.02 | 0.61 | 0.00 | 0.01 | 0.36 | 0.00 | 0.00 |
| Morkill, BC | Su | 53.60 | 120.70 | 90 | 0.00 | 0.00 | 0.73 | 0.00 | 0.00 | 0.27 | 0.00 | 0.00 |
| Atnarko, BC | Su | 52.37 | 126.10 | 84 | 0.00 | 0.00 | 0.65 | 0.00 | 0.00 | 0.31 | 0.00 | 0.04 |
| Clearwater, BC | Su | 51.55 | 120.20 | 86 | 0.00 | 0.00 | 0.72 | 0.00 | 0.00 | 0.28 | 0.00 | 0.00 |
| Klinaklini River, BC | Su | 51.10 | 125.72 | 80 | 0.00 | 0.00 | 0.80 | 0.00 | 0.00 | 0.17 | 0.00 | 0.03 |
| Birkenhead River, BC | S | 50.32 | 122.60 | 94 | 0.00 | 0.00 | 0.97 | 0.00 | 0.00 | 0.03 | 0.00 | 0.00 |
| Spius River, BC | S | 50.15 | 121.02 | 50 | 0.00 | 0.00 | 0.74 | 0.00 | 0.00 | 0.26 | 0.00 | 0.00 |
| Big Qualicum, BC | F | 49.40 | 124.62 | 94 | 0.00 | 0.00 | 0.91 | 0.00 | 0.00 | 0.09 | 0.00 | 0.00 |
| Carson River, WA | S | 48.48 | 120.19 | 54 | 0.00 | 0.00 | 0.46 | 0.00 | 0.00 | 0.48 | 0.00 | 0.06 |
| Methow River, WA | Su | 48.13 | 120.06 | 58 | 0.00 | 0.00 | 0.45 | 0.03 | 0.00 | 0.52 | 0.00 | 0.00 |
| Cowlitz River, WA | A | 46.51 | 122.62 | 86 | 0.00 | 0.02 | 0.84 | 0.01 | 0.00 | 0.13 | 0.00 | 0.00 |
| Cowlitz River, WA | S | 46.51 | 122.62 | 70 | 0.00 | 0.06 | 0.74 | 0.00 | 0.00 | 0.20 | 0.00 | 0.00 |
| Imnaha River, OR | S | 45.73 | 117.86 | 82 | 0.00 | 0.00 | 0.65 | 0.00 | 0.00 | 0.34 | 0.01 | 0.00 |
| Wilson River, OR | A | 45.47 | 123.75 | 72 | 0.00 | 0.00 | 0.80 | 0.00 | 0.00 | 0.20 | 0.00 | 0.00 |
| L. Deschutes River, OR | A | 45.28 | 121.02 | 76 | 0.00 | 0.00 | 0.80 | 0.00 | 0.00 | 0.20 | 0.00 | 0.00 |
| Secesh River, ID | S | 45.23 | 115.81 | 76 | 0.00 | 0.00 | 0.63 | 0.00 | 0.00 | 0.37 | 0.00 | 0.00 |
| Nestucca River, OR | A | 45.12 | 123.40 | 92 | 0.00 | 0.00 | 0.95 | 0.01 | 0.00 | 0.04 | 0.00 | 0.00 |
| Siletz River, OR | S | 44.92 | 124.02 | 64 | 0.00 | 0.00 | 0.94 | 0.02 | 0.00 | 0.05 | 0.00 | 0.00 |
| Siletz River, OR | A | 44.92 | 124.02 | 60 | 0.00 | 0.00 | 0.93 | 0.00 | 0.00 | 0.07 | 0.00 | 0.00 |
| McKenzie River, OR | S | 44.12 | 122.62 | 86 | 0.01 | 0.00 | 0.66 | 0.00 | 0.00 | 0.33 | 0.00 | 0.00 |
| S. Umpqua River, OR | A | 43.67 | 124.20 | 94 | 0.00 | 0.00 | 0.82 | 0.00 | 0.00 | 0.16 | 0.00 | 0.02 |
| N. Umpqua River, OR | S | 43.67 | 124.20 | 88 | 0.00 | 0.00 | 0.78 | 0.00 | 0.00 | 0.22 | 0.00 | 0.00 |
| Rogue River, OR | S | 42.65 | 122.68 | 46 | 0.00 | 0.00 | 0.83 | 0.02 | 0.00 | 0.15 | 0.00 | 0.00 |
| Rogue River, OR | A | 42.42 | 123.45 | 48 | 0.00 | 0.00 | 0.83 | 0.02 | 0.00 | 0.15 | 0.00 | 0.00 |
| Klamath River, CA | A | 41.27 | 123.78 | 90 | 0.00 | 0.00 | 0.97 | 0.00 | 0.00 | 0.03 | 0.00 | 0.00 |
| McCloud River, CA | W | 41.09 | 122.12 | 188 | 0.00 | 0.00 | 0.81 | 0.07 | 0.00 | 0.12 | 0.00 | 0.00 |
| Trinity River, CA | A | 40.72 | 122.80 | 94 | 0.00 | 0.00 | 1.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |
| Trinity River, CA | S | 40.72 | 122.80 | 82 | 0.00 | 0.00 | 0.99 | 0.00 | 0.00 | 0.01 | 0.00 | 0.00 |
| Sacramento, CA | A | 40.42 | 122.03 | 182 | 0.00 | 0.00 | 0.73 | 0.06 | 0.00 | 0.21 | 0.00 | 0.00 |
| Deer Creek, CA | S | 40.17 | 121.60 | 156 | 0.00 | 0.00 | 0.72 | 0.01 | 0.00 | 0.27 | 0.00 | 0.00 |
| Butte Creek, CA | S | 39.97 | 121.58 | 36 | 0.00 | 0.00 | 0.72 | 0.00 | 0.00 | 0.28 | 0.00 | 0.00 |
| Russian River, CA | A | 38.52 | 122.98 | 64 | 0.00 | 0.00 | 0.84 | 0.02 | 0.00 | 0.14 | 0.00 | 0.00 |
| total (N) | — | — | — | 3462 | 0.0002(1) | 0.002(8) | 0.737(2550) | 0.010(33) | 0.0002(1) | 0.225(779) | 0.0002(1) | 0.026(89) |