. 2008 Nov 5;3(11):e3602. doi: 10.1371/journal.pone.0003602

Table 3. Trypanosome sequences obtained from the Christmas Island rats.

Species designation	Sample number	A								B
		1^a	4	58	9–15	18	21–23	26	29	1–5	7–35	38–42
*Trypanosoma lewisi*	AJ223566	C	A	TTCT	- - - - -TT	G	- - -	C	T	TTTTT	G -14 bp del- TCCTCGCAAGAGGT	TTTTA
*Trypanosoma musculi*	AJ223568	.	.	. . . .	TT - - - - -	.	- - -	.	.	. . . . . .	GTCCTC GCA - AGAGGT	- - - - -
*Trypanosoma cruzi*	M31432	.	G	TTTT	TT - - - A -	.	TAG	.	.	. . . . . .	TCTTCGTTTTTTTT ACGGCGAGGA	TTTAA
*Bodo saliens*	AF174379	.	T	TC- -	- - - - - A A	.	- - -	.	C	CGTTG	CTTT ACCG	AATAT
*Bodo saltans*	AF208889	T	T	CT- -	- - - - - - A	A	- - -	A	.	TACTG	CCTTC GGG	GTCAA
*Rattus rattus*	E2079	.	.	. . . .	. . . . . . .	.	. . .	.	.	. . . . .	. . . . . . . . . . . . . . . . . . . . . . . . . . . . .	. . . . .
Putative hybrids	18607	.	.	. . . .	. . . . . . .	.	. . .	.	.	. . . . .	. . . . . . . . . . . . . . . . . . . . . . . . . . . . .	. . . . .
	E2074^d	nd	nd	nd	nd	nd	nd	nd	nd	. . . . .	. . . . . . . . . . . . . . . . . . . . . . . . . . . . .	. . . . .
	E2075^d	.	.	- - -T	. . . . . . .	.	. . .	.	.	nd	nd	nd
*Rattus macleari*	E2077^d	nd	nd	nd	nd	nd	nd	nd	nd	. . . . .	. . . . . . . . . . . . . . . . . . . . . . . . . . . . .	. . . . .
	18846	.	.	. . . .	. . . . . . .	.	. . .	.	.	. . . . .	. . . . . . . . . . . . . . . . . . . . . . . . . . . . .	. . . . .

Numbering begins from the first base after the 5′ PCR primer. T. lewisi is used as a reference sequence. Identities are shown as dots and differences as the differing bases except for long stretches of insertions or deletions where the entire stretch of sequences are shown. Long deletions are given as numbers of deleted bases.

A and B refer to the individual PCR products amplified with the two independent PCR primers (see Table 1).

Sequences not determined are shown as “nd”.

The results for these samples were not replicated.