Table 1. GC-content and human-mouse sequence conservation in structural domains of human PK and non-PK genes.
Features | Non- PK genes | PK genes | PK expression level | PK expression breadth | |||||
Ubiqui-tous | Nervous tissue | Testis | |||||||
High | Low | Up-reg | Down-reg | Up-reg | Down-reg | ||||
5′-spacer | |||||||||
Conservation, % | 56.48 | 55.28 | 53.62 | 55.52 | 55.66 | 56.59 | 53.40 | 58.33 | 56.60 |
G+C content, % | 45.53 | 47.39 | 47.33 | 47.36 | 50.65 | 49.17 | 49.54 | 48.05 | 49.82 |
Promoter region | |||||||||
Conservation, % | 59.97 | 60.02 | 58.26 | 59.63 | 61.38 | 61.17 | 55.96 | 60.88 | 60.37 |
G+C content, % | 48.42 | 50.83 | 50.25 | 49.61 | 56.27 | 53.19 | 52.00 | 48.52 | 53.10 |
Primary transcript | |||||||||
Conservation, % | 59.88 | 59.03 | 59.70 | 59.28 | 59.17 | 58.41 | 57.78 | 66.54 | 61.46 |
G+C content, % | 45.08 | 45.92 | 46.65 | 46.99 | 49.28 | 46.92 | 48.27 | 46.68 | 49.65 |
5′UTR | |||||||||
Conservation, % | 72.43 | 73.54 | 74.2 | 70.32 | 76.61 | 76.76 | 68.3 | 71.66 | 74.77 |
G+C content, % | 61.27 | 65.32 | 66.58 | 61.01 | 72.39 | 64.3 | 67.12 | 60.49 | 67.05 |
Protein coding regions | |||||||||
Conservation, % | 85.28 | 87.08 | 87.81 | 84.85 | 88.80 | 88.57 | 85.03 | 84.83 | 87.40 |
G+C content, % | 51.96 | 52.20 | 52.53 | 52.65 | 54.37 | 54.05 | 53.68 | 51.23 | 54.25 |
Introns | |||||||||
Conservation, % | 56.14 | 55.03 | 55.04 | 54.77 | 55.05 | 55.59 | 53.44 | 56.10 | 57.13 |
G+C content, % | 43.64 | 45.08 | 45.82 | 45.96 | 48.63 | 46.53 | 47.40 | 40.92 | 48.97 |
Intron number | 9.3 | 16.3 | 17 | 16.8 | 13.4 | 18 | 14 | 4.5 | 14.3 |
3′UTR | |||||||||
Conservation, % | 68.59 | 69.48 | 70.83 | 64.13 | 71.69 | 71.19 | 64.96 | 66.19 | 68.47 |
G+C content, % | 42.90 | 45.20 | 46.12 | 46.43 | 47.39 | 46.55 | 46.55 | 41.44 | 47.06 |
3′-spacer | |||||||||
Conservation, % | 58.15 | 58.59 | 59.52 | 58.04 | 57.69 | 59.87 | 56.12 | 56.82 | 59.40 |
G+C content, % | 44.11 | 46.44 | 47.73 | 46.77 | 48.87 | 47.22 | 48.34 | 44.33 | 46.86 |
Genomic repetitive elements were excluded from computation of sequence conservation. Data are presented as averages. Gene groups are defined in Figure 2 legend.