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. 2008 Oct 31;3(10):e3599. doi: 10.1371/journal.pone.0003599

Table 1. GC-content and human-mouse sequence conservation in structural domains of human PK and non-PK genes.

Features Non- PK genes PK genes PK expression level PK expression breadth
Ubiqui-tous Nervous tissue Testis
High Low Up-reg Down-reg Up-reg Down-reg
5′-spacer
Conservation, % 56.48 55.28 53.62 55.52 55.66 56.59 53.40 58.33 56.60
G+C content, % 45.53 47.39 47.33 47.36 50.65 49.17 49.54 48.05 49.82
Promoter region
Conservation, % 59.97 60.02 58.26 59.63 61.38 61.17 55.96 60.88 60.37
G+C content, % 48.42 50.83 50.25 49.61 56.27 53.19 52.00 48.52 53.10
Primary transcript
Conservation, % 59.88 59.03 59.70 59.28 59.17 58.41 57.78 66.54 61.46
G+C content, % 45.08 45.92 46.65 46.99 49.28 46.92 48.27 46.68 49.65
5′UTR
Conservation, % 72.43 73.54 74.2 70.32 76.61 76.76 68.3 71.66 74.77
G+C content, % 61.27 65.32 66.58 61.01 72.39 64.3 67.12 60.49 67.05
Protein coding regions
Conservation, % 85.28 87.08 87.81 84.85 88.80 88.57 85.03 84.83 87.40
G+C content, % 51.96 52.20 52.53 52.65 54.37 54.05 53.68 51.23 54.25
Introns
Conservation, % 56.14 55.03 55.04 54.77 55.05 55.59 53.44 56.10 57.13
G+C content, % 43.64 45.08 45.82 45.96 48.63 46.53 47.40 40.92 48.97
Intron number 9.3 16.3 17 16.8 13.4 18 14 4.5 14.3
3′UTR
Conservation, % 68.59 69.48 70.83 64.13 71.69 71.19 64.96 66.19 68.47
G+C content, % 42.90 45.20 46.12 46.43 47.39 46.55 46.55 41.44 47.06
3′-spacer
Conservation, % 58.15 58.59 59.52 58.04 57.69 59.87 56.12 56.82 59.40
G+C content, % 44.11 46.44 47.73 46.77 48.87 47.22 48.34 44.33 46.86

Genomic repetitive elements were excluded from computation of sequence conservation. Data are presented as averages. Gene groups are defined in Figure 2 legend.