Table 3.
Overview of common interfaces.
#Family | #CFGs | #Entry | In PDB (%)** | In PQS (%) | In PISA (%) | In ASU (%) | |
---|---|---|---|---|---|---|---|
Single-domain Structures | 1377 | 8816 | 19842 | - | - | - | - |
≥2 CFGs/Family | 1125 | 8564 | 19446 | - | - | - | - |
≥2 CFGs/Cluster | 868 | 6292 | 15264 | - | - | - | - |
N/N (N ≥ 4) | 176 | 1372 | 3139 | 90 | 95 | 97 | 58 |
1>M/N > 0.7 (N ≥ 4) | 74 | 676 | 1781 | 88 | 91 | 93 | 61 |
N/N (N = 2, 3) | 266 | 618 | 1049 | 70 | 76 | 80 | 52 |
M ≥ 4 (M/N ≥ 0.5)* | 248 | 2136 | 5200 | 89 | 93 | 95 | 59 |
From the analysis of Ponstingl/Bahadur benchmark set and NMR structures, M ≥ 4 and M/N ≥ 0.5 is most likely to be biological interest.
% in PDB, PQS, PISA and ASU are based on clusters, may have duplicate entries. NMR entries are excluded.