Table 6.

List of Oryza rufipogon W1943 tissue-specific genes (unit: tpm)

Clone Acc.	Leaf	Root	NGS	NCA	NGD	NME	NPO	PFAM Acc.	Description	E-value
CU406902	44 199	0	101	0	19	0	0	PF07207	Lir1	4.8e–85
CU405979	36 785	0	894	0	256	9	0
CT841733	25 112	41	120	0	241	0	0	PF00101	RuBisCO_small	2.5e–45
CU405975	15 421	1278	0	0	650	223	0
CT841994	9140	0	10	0	18	0	0
CU406521	3504	6	0	0	0	0	0	PF01070	FMN_dh	2.8e–31
CU405996	3069	0	27	0	28	15	0	PF00430	ATP-synt_B	3.4e–28
CU405670	2653	0	11	5	21	4	23	PF00085	Thioredoxin	7.8e–43
CU406006	2337	0	0	0	0	0	10
CU406668	2126	3	17	0	16	0	0
CT841650	1997	0	0	0	0	0	0	PF00112	Peptidase_C1	6e–109
CT841731	1942	0	0	0	12	0	0	PF02507	PSI_PsaF	0
CT841902	1486	0	24	0	31	0	0
CU405952	1253	7	110	5	2	5	0
CU406199	1235	0	16	0	0	0	0
CU406624	1012	0	60	58	0	3	5	PF05899	DUF861	2.1e–37
CU406431	0	189	0	0	0	18	17
CU405706	1456	15 907	0	183	803	0	0	PF01439	Metallothio_2	2.7e–32
CU406330	0	358	4	0	0	1	31
CT841629	217	2721	157	36	80	25	86	PF01124	MAPEG	3.1e–63
CU406513	18	230	0	0	0	0	0	PF01439	Metallothio_2	1.6e–34
CU406576	0	231	0	11	0	0	0
CU406281	29	449	0	0	0	14	0
CT841966	15	520	0	0	0	0	0	PF00188	SCP	5.7e–55
CU405942	0	185	0	5	0	0	0	PF00967	Barwin	3e–84
CU406520	5	1209	0	0	0	0	0
CU406670	0	189	0	0	0	0	0	PF00280	Potato_inhibit	1.4e–20
CU406238	41	0	987	33	31	0	0	PF04398	DUF538	4.9e–41
CT841875	16	0	0	162	3	3	15
CT841950	119	135	76	3079	107	19	0
CT841815	107	135	76	3087	107	19	0
CU406940	59	68	19	31	1393	4	0	PF02065	Melibiase	3.5e–13
CU406598	565	0	606	757	16 965	0	0	PF00234	Tryp_alpha_amyl	1.6e–31
CU406533	7	0	14	30	4662	119	0	PF00234	Tryp_alpha_amyl	5.5e–33
CU406609	0	0	0	0	143	0	0
CU406264	0	0	0	0	237	0	0
CU405759	0	0	0	0	779	0	0
CU406038	14	14	0	0	247	0	0
CU405951	0	25	0	0	13	1347	0	PF01439	Metallothio_2	6.5e–22
CU406698	13	0	0	0	0	0	289	PF00481	PP2C	2.4e–14
CU406351	103	4	36	66	48	42	3228

NGS, 3 days—Germinating seed; NCA, 35 days—Callus; NGD, 10 days—Germinating seedlings grown in dark; NME, 60 days—Crown vegetative meristematic tissue; NPO, mature pollen.