Table 1.
Superfamily | Family | Promoters | E-box Matches | Percent with E-box | P-value |
Sra | sra | 39 | 0 | (0) | NS |
Sra | srab | 27 | 1 | (3.7) | NS |
Sra | srb | 19 | 0 | (0) | NS |
solo | srbc | 64 | 0 | (0) | NS |
Str | srd | 71 | 0 | (0) | NS |
Sra | sre | 55 | 14 | 25.5 | <0.0001 |
Srg | srg | 69 | 4 | 5.8 | NS |
Str | srh | 304 | 104 | 34.2 | <0.0001 |
Str | sri | 78 | 39 | 50.0 | <0.0001 |
solo | srsx | 35 | 1 | (2.9) | NS |
Srg | srt | 73 | 1 | (1.4) | NS |
Srg | sru | 45 | 4 | 8.9 | 0.02 |
Srg | srv | 36 | 2 | 5.6 | NS |
solo | srw | 148 | 8 | 5.4 | 0.04 |
Srg | srx | 137 | 3 | 2.2 | NS |
Srg | srxa | 16 | 2 | 12.5 | NS |
solo | srz | 104 | 51 | 49.0 | <0.0001 |
Str | str/srj | 323 | 9 | 2.8 | NS |
All SR | 1675 | 246 | 14.7 | ||
All genes | 20569 | 500 | 2.4 | NA |
E-box hits are the 500 highest scoring motif matches in promoters from -200 to -20 from the translation start codon. Percent values based on zero or one hit are in parentheses to indicate high uncertainty. The uncorrected P-value shown was determined by comparison with the number of hits in all promoters (Fisher's exact test for small families and the χ-square approximation for large families). After Bonferoni correction for multiple testing the sru and srw P-values are not significant. The str and srj families are closely related and were analyzed together. A few small chemoreceptor families are not shown individually, so numbers shown do not add up to the SR total. SR, all members of putative chemoreceptor families; NA, not applicable; NS, not significant.