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. 2008 Oct 6;6:42. doi: 10.1186/1741-7007-6-42

Table 1.

E-box matches for all promoters

Superfamily Family Promoters E-box Matches Percent with E-box P-value
Sra sra 39 0 (0) NS
Sra srab 27 1 (3.7) NS
Sra srb 19 0 (0) NS
solo srbc 64 0 (0) NS
Str srd 71 0 (0) NS
Sra sre 55 14 25.5 <0.0001
Srg srg 69 4 5.8 NS
Str srh 304 104 34.2 <0.0001
Str sri 78 39 50.0 <0.0001
solo srsx 35 1 (2.9) NS
Srg srt 73 1 (1.4) NS
Srg sru 45 4 8.9 0.02
Srg srv 36 2 5.6 NS
solo srw 148 8 5.4 0.04
Srg srx 137 3 2.2 NS
Srg srxa 16 2 12.5 NS
solo srz 104 51 49.0 <0.0001
Str str/srj 323 9 2.8 NS
All SR 1675 246 14.7
All genes 20569 500 2.4 NA

E-box hits are the 500 highest scoring motif matches in promoters from -200 to -20 from the translation start codon. Percent values based on zero or one hit are in parentheses to indicate high uncertainty. The uncorrected P-value shown was determined by comparison with the number of hits in all promoters (Fisher's exact test for small families and the χ-square approximation for large families). After Bonferoni correction for multiple testing the sru and srw P-values are not significant. The str and srj families are closely related and were analyzed together. A few small chemoreceptor families are not shown individually, so numbers shown do not add up to the SR total. SR, all members of putative chemoreceptor families; NA, not applicable; NS, not significant.