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. 2008 Oct 8;8:277. doi: 10.1186/1471-2148-8-277

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Copyright ©2008 den Bakker et al; licensee BioMed Central Ltd.

This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.

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Phylogenies inferred by ClonalFrame without (A) and with (B) correction for recombination. The phylogram (A) shows a 50% majority-rule consensus tree based on ClonalFrame output (see Methods section) for all 92 unique STs and ignoring the role of recombination. The phylogram (B) is the same, but recombination was taken into account in the model of genetic diversification. The rulers indicate the time in coalescent units. Dashed grey lines show the estimated time to the most recent common ancestors of lineage I and II.