Table 4.
Recombination rates inferred by ClonalFrame analysis.
| ρa | r/mb | ρ/θc | ||
|---|---|---|---|---|
| Lineage I | Run 1 | 10.75 (3.25–22.83) | 0.64 (0.27–1.28) | 0.12 (0.04–0.25) |
| Run 2 | 11.48 (4.27–22.77) | 0.69 (0.29–1.27) | 0.13 (0.05–0.25) | |
| Run 3 | 10.86 (2.59–21.00) | 0.64 (0.26–1.21) | 0.12 (0.03–0.23) | |
| Run 4 | 12.32 (3.35–27.06) | 0.67 (0.27–1.25) | 0.14 (0.04–0.30) | |
| Run 5 | 12.03 (4.19–22.55) | 0.69 (0.28–1.26) | 0.13 (0.05–0.25) | |
| All runs combined | 11.4 (2.17–21.76) | 0.66 (0.24–1.19) | 0.13 (0.03–0.23) | |
| Lineage II | Run 1 | 41.47 (30.32–56.30) | 4.30 (3.17–5.76) | 0.69 (0.51–0.94) |
| Run 2 | 42.07 (29.89–56.13) | 4.24 (3.00–5.79) | 0.70 (0.50–0.94) | |
| Run 3 | 43.28 (31.86–58.83) | 4.61 (3.35–6.17) | 0.72 (0.53–0.95) | |
| Run 4 | 41.87 (29.93–55.59) | 4.35 (3.12–5.86) | 0.70 (0.50–0.93) | |
| Run 5 | 42.46 (28.77–61.04) | 4.43 (3.02–6.26) | 0.71 (0.48–1.02) | |
| All runs combined | 42.65 (29.27–56.30) | 4.42 (3.04–5.89) | 0.71 (0.49–0.94) | |
Mean value of the parameters with the 95% credibility interval given in brackets.
a Recombination rate
b Relative impact of recombination as compared to point mutation in the genetic diversification of the lineage
c Relative frequency of occurrence of recombination as compared to point mutation in the history of the lineage