Table 2.
Comparison of the evenly-distributed MM probes and the MM probes designed using the MPDNN modeling parameter
| Name | Type | Sequence* | RSI** |
| DVU0625_MM4 | Evenly | GCAGGCTATAACGACCTGAGGATCCAGGCACGTGAGATGATCCGCAAGGG | 0.345 |
| MPDNN | GCAGGCTATAACGACCTGATAATCCAGACCCGTGAGATAGTCCGCAAGGG | 0.109 | |
| DVU1466_MM4 | Evenly | TGGCAAGGTAGGCGAAGTGGTGGGCGTGAGCACGACGCTGCTGCGTTCTC | 0.527 |
| MPDNN | TGGCAAGGTGGACGAAGTGATAGGCGTAAACACGACGCGACTGCGTTCTC | 0.158 | |
| DVU1782_MM4 | Evenly | GGGTGGGAGGTGGTCTACAACCATCCTGCACTGTATTCCGTCGTCTTGAA | 0.190 |
| MPDNN | GGGTGGGAGAGGGTCTACAACCATCCTGCCCGGTATTCATTCGTCTTGAA | 0.100 | |
| DVU2526_MM4 | Evenly | AAGGTCGAGAAGGTGAACCAGGAACAGATGGTGGAGCATATGGCCCACAG | 0.345 |
| MPDNN | AAGGTCGAGGAAGTGAACCCAGAACAGATAATGGAGCATGTAGCCCACAG | 0.136 | |
| MMP0707_MM4 | Evenly | CAGAGGAGTGGTTCCTGCGACACTTGCGGAAATGATATAAACAAATATTA | 0 |
| MPDNN | CAGAGGAATAGTTCCTGCGACACTTGCGGCAGTGATATGCACAAATATTA | 0.100 | |
| MMP0926_MM4 | Evenly | ATTAAACAGATTAAAGATGATTCAAAATCAAAAGTAAGAGTTAAATCATC | 0 |
| MPDNN | ATTAAACAGGGTAAAGATGATTCAAAATCCGAAGTAAGAAGTAAATCATC | 0.042 | |
| MMP1559_MM4 | Evenly | ATTAAAAGCGGCAATTGGTGAAAAAACATGCCAAGTATCGAGAGTTCCAT | 0 |
| MPDNN | ATTAAAAGATGCAATTGGGAAAAAAACATGCCAAGTATCGAGAGTTCCAT | 0.056 | |
| SO1362_MM4 | Evenly | GGTAGTTATGGTGGGCGGTGAAGGCCAGCGTGGCGGGCTATTTCAACAAA | 0.353 |
| MPDNN | GGTAGTTATAATGGGCGGTAAGGGCCAACTTGGCGGGCGGTTTCAACAAA | 0.102 | |
| SO1779_MM4 | Evenly | CGCATTTCGGTTGGCAACCGTCAACAGGTGAAACAGAAGACATTCAAACT | 0 |
| MPDNN | CGCATTTCGGTTGGCAAACTTCAACAGGTGAAACAGAAAGCATTCAAACT | 0.101 | |
| SO2452_MM4 | Evenly | GTTACATGAATTTGGTGATAGTCAAGATTAGCAGATCCTAATGCAACAAG | 0 |
| MPDNN | GTTACATGACTGTGGTGGTCGTCAAGAGTGGCAGATCCTAATGCAACAAG | 0.101 |
*The 50-mer MM probe sequences. The letters in shadow are the mismatched nucleotides.
**The predicted relative signal intensity (RSI) using the MPDNN model.