Table 1.

The top 20 proteins specifically recognized by Probe 3 with a G:T mismatch

Rank	Ratioa	Protein	Function or proposed function
1	12.17 ± 0.24	cspE	Cold shock–like protein
2	6.97 ± 1.35	ybcN	Hypothetical protein
3	4.49 ± 0.40	ybfN	Predicted lipoprotein
4	4.28 ± 0.36	cspC	Cold shock–like protein
5	4.12 ± 0.17	dgt	Deoxyguanosine triphosphate triphosphohydrolase
6	3.57 ± 0.07	cspA	Cold shock–like protein
7	3.53 ± 0.26	yeaO	Conserved hypothetical protein
8	2.55 ± 0.10	dsbG	Thiol:disulfide interchange protein dsbG precursor
9	2.41 ± 0.50	ybdB	Esterase
10	2.16 ± 1.22	yfeH	Putative cytochrome oxidase
11	2.16 ± 0.14	polA	DNA polymerase I, 3′ → 5′ polymerase, 5′ → 3′ and 3′ → 5′ exonuclease
12	2.10 ± 0.02	pldB	Lysophospholipase L2
13	2.01 ± 0.12	yhfS	Hypothetical protein
14	2.00 ± 0.05	modC	Molybdenum import ATP-binding protein
15	1.95 ± 0.17	yjiV	Hypothetical protein
16	1.84 ± 0.09	ygbT	Conserved protein
17	1.83 ± 0.25	treR	HTH-type transcriptional regulator
18	1.75 ± 0.02	secD	Protein-export membrane protein
19	1.74 ± 0.04	ycaJ	Recombination protein
20	1.74 ± 0.03	yfeP	MntH manganese ion NRAMP transporter

^aThe signals obtained from probing experiments with probe 3 were normalized against those from probe 1 as the control. The ranked ratios are shown.