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. 2008 Aug 15;95(10):4643–4658. doi: 10.1529/biophysj.108.137125

TABLE 1.

RMSD (Å) between modeled structures and the correct structure for the homodimer (PDB code: 1afw, C2 symmetry)

Resolution (Å) No. of GDFs No. of GDFs per complex map§
Symmetry* 2 3 4 6 12 18 24
False 10 4 2 1 2 2 2 2 2
20 4 2 1 1 2 1 1 1
30 4 2 3 2 1 1 2 2
10 8 1 1 1 1 2 1 2
20 8 1 1 1 1 1 1 1
30 8 2 1 1 1 1 1 1
10 16 2 1 1 1 1 1 1
20 16 1 2 1 1 1 1 1
30 16 3 2 1 1 1 1 1
10 32 2 2 2 2 1 0 0
20 32 2 1 1 1 1 1 1
30 32 2 2 2 1 2 1 1
True 10 4 2 1 2 2 2 2 2
20 4 2 1 1 2 1 1 1
30 4 2 3 1 2 1 2 2
10 8 1 1 2 1 2 1 2
20 8 1 1 1 1 1 1 1
30 8 2 1 1 1 1 1 1
10 16 1 2 1 1 1 1 1
20 16 1 1 1 2 1 1 1
30 16 1 2 1 1 1 1 2
10 32 1 2 2 2 1 1 0
20 32 1 1 2 2 2 1 1
30 32 2 2 1 2 1 2 2
*

“True” indicates that the search was performed using a random symmetric initial configuration and restraint energy of symmetry. “False” indicates that these were not used.

A resolution value (Å) of a simulated 3D density map.

Number of GDFs for each subunit atomic model.

§

Number of GDFs for a 3D density map of the complex.