RNA gel shift analysis of HuR binding to wild type and mutant
C/EBPβ 3′-UTR AREs. A, a schematic of C/EBPβ mRNA
indicating the approximate translation initiation sites for liver activating
protein 1 and 2 (LAP) and liver inhibitory protein (LIP)
forms of C/EBPβ, the HuR binding domain, and termination of translation
is shown. The graphic below describes the sequence alterations in the mutants.
In βwt, the uppercase bases indicate the sequence altered to
form βpm, in which the uppercase bases indicate the mutations
used to create BglII restriction sites in βwt. βdel is a religation
of the construct after removal of the BglII fragment. βd/s consists of
removal of the BglII fragment and insertion of a 101-base fragment that does
not bind HuR. B, cytosolic extracts and a radiolabeled probe
corresponding to the ARE (βwt and βpm), βd/s, or the region
flanking (βdel) the C/EBPβ 3′-UTR were used to perform RNA gel
shift and super shift analysis. Lanes 1, 4, 7, and
10, probe alone; lanes 2, 5, 8, and
11, probe plus 10 μg of adipocyte cytosolic extract; lanes
3, 6, 9, and 12, supershift of complex formed
as in lanes 2, 5, 8, and 11 using the 3A2
anti-HuR monoclonal antibody. The gel shifts shown were performed at the same
time, and separation was achieved on two separate gels, βwt andβdel
on one andβpm andβd/s on the second. The arrangement was for logical
presentation. These data are representative of two individual gel shifts with
each probe as the alterations were made, using two individual preparations of
cytosolic extracts.