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. Author manuscript; available in PMC: 2009 Jan 1.
Published in final edited form as: J Proteome Res. 2007 Aug 21;7(1):96–103. doi: 10.1021/pr070244j

Table 4.

Mean sequence coverage and counts of identified CID spectra

Mean % sequence coverage (mean spectrum count)
Protein Mix 1 Mix 2 Mix 3 Mix 4

Actin, aortic smooth muscle 44.2 (48.0) 48.9 (54.5) 38.5 (51.8) 30.9 (28.5)
Alkaline phosphotase 86.2 (218.7) 82.8 (161.8) 91.7 (150.0) 83.5 (95.8)
Alpha-amylase 56.6 (68.4) 63.4 (58.1) 42.0 (51.2) 35.2 (24.6)
Alpha-lactalbumin 73.9 (32.7) 67.9 (37.8) 50.5 (14.2) 43.6 (13.9)
Beta-casein 37.1 (28.0) 66.8 (51.0) 30.4 (15.5) 22.9 (5.9)
Beta-galactosidase 79.1 (292.4) 87.4 (273.7) 51.8 (126.9) 46.0 (78.4)
Beta-lactoglobulin 77.4 (54.4) 80.8 (47.7) 55.9 (36.1) 53.8 (21.5)
Carbonic anhydrase 2 78.2 (69.6) 83.2 (85.3) 74.5 (76.0) 53.9 (27.7)
Catalase 72.6 (108.7) 75.4 (99.9) 57.7 (75.2) 53.1 (57.8)
Cytochrome c 67.3 (40.8) 66.0 (32.6) 69.6 (24.6) 60.5 (14.4)
Glyceraldehyde-3-phosphate dehydrogenase 73.2 (261.2) 78.3 (173.7) 69.6 (126.7) 59.2 (62.7)
Glycogen phosphorylase, muscle form 71.5 (230.2) 76.5 (180.0) 54.0 (115.3) 52.1 (82.1)
Mannose-6-phosphate isomerase 80.4 (88.2) 91.5 (122.6) 42.9 (34.0) 38.1 (20.2)
Myoglobin 74.6 (35.8) 79.4 (43.0) 48.2 (12.6) 46.0 (9.4)
Myosin light chain 1, skeletal muscle isoform 87.8 (61.5) 85.1 (55.8) 44.3 (19.1) 43.3 (16.3)
Ovalbumin 70.6 (92.8) 80.4 (112.5) 31.2 (37.8) 23.1 (17.7)
Serotransferrin 74.0 (167.8) 70.4 (139.5) 67.6 (170.9) 61.6 (102.3)
Serum albumin 72.8 (155.0) 74.0 (145.8) 64.2 (75.0) 65.3 (83.9)

Average coverage (total mean spectra count) 71.5 (2054.2) 75.5 (1875.3) 54.7 (1212.9) 48.5 (763.1)