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. 2008 Nov;148(3):1557–1569. doi: 10.1104/pp.108.125518

Table I.

Sequences (5′ to 3′) of primer combinations and annealing temperatures for the seven α-expansin genes studied using real-time RT-PCR

These seven α-expansin gene fragments were cloned from the internodes of the alpine and prairie ecotypes of S. longipes. For each gene, sequences were identical in both ecotypes. The primers listed against a particular gene were used at the annealing temperatures indicated for the measurement of the transcript abundance of that gene using real-time RT-PCR. GenBank accession numbers for these genes are EU840703 to EU840714, EU840720, and EU840721.

Gene Forward Primer Reverse Primer Annealing Temperature
°C
SlEXPA1 GGCCATGCCTATGTTCCTAA CCCTTTGATGCTTACGCTCT 62
SlEXPA2 GCATTGTCCCTGTTGCTTTT CCTTGTCCCTTTAACCCACA 62
SlEXPA3 GTACCATGCCGAAAACAAGG ACCCCAGTAGCGACTCATTG 62
SlEXPA4 GCTGGAATTGTCCCAGTCTC ACCCCAGTAGCTTGACATGG 65
SlEXPA5 CCCGTCCTCATTTCGACTTA ACCCCAGTAACGACTCATGG 65
SlEXPA6 TGTGCGAGAAAAGGAGGAGT GCCAATTTTGTCCCCAGTAA 62
SlEXPA7 TTTGAGCTTAAGTGCGCAGA ATGGCCAAGTCAAAGTGAGG 65
Sl18S CCGTTGCTCTGATGATTCATGA GTTGATAGGGCAGAAATTTGAATGAT 62