Table I.
Sequences (5′ to 3′) of primer combinations and annealing temperatures for the seven α-expansin genes studied using real-time RT-PCR
These seven α-expansin gene fragments were cloned from the internodes of the alpine and prairie ecotypes of S. longipes. For each gene, sequences were identical in both ecotypes. The primers listed against a particular gene were used at the annealing temperatures indicated for the measurement of the transcript abundance of that gene using real-time RT-PCR. GenBank accession numbers for these genes are EU840703 to EU840714, EU840720, and EU840721.
Gene | Forward Primer | Reverse Primer | Annealing Temperature |
---|---|---|---|
°C | |||
SlEXPA1 | GGCCATGCCTATGTTCCTAA | CCCTTTGATGCTTACGCTCT | 62 |
SlEXPA2 | GCATTGTCCCTGTTGCTTTT | CCTTGTCCCTTTAACCCACA | 62 |
SlEXPA3 | GTACCATGCCGAAAACAAGG | ACCCCAGTAGCGACTCATTG | 62 |
SlEXPA4 | GCTGGAATTGTCCCAGTCTC | ACCCCAGTAGCTTGACATGG | 65 |
SlEXPA5 | CCCGTCCTCATTTCGACTTA | ACCCCAGTAACGACTCATGG | 65 |
SlEXPA6 | TGTGCGAGAAAAGGAGGAGT | GCCAATTTTGTCCCCAGTAA | 62 |
SlEXPA7 | TTTGAGCTTAAGTGCGCAGA | ATGGCCAAGTCAAAGTGAGG | 65 |
Sl18S | CCGTTGCTCTGATGATTCATGA | GTTGATAGGGCAGAAATTTGAATGAT | 62 |