Table 1.
Structural classification of the Bet v 1-like superfamily.
| Family name | SCOP family | No. of structuresa | Representative structure | ||
|---|---|---|---|---|---|
| PDB ID | Description | RMSD/no. of aligned residuesb | |||
| Bet v 1 family | Pathogenesis-related protein 10 (PR10)-like [SCOP:d.129.3.1] |
15 | [PDB:1bv1] | Birch pollen allergen Bet v 1; Betula verrucosa (white birch) | 0.00/159 |
| START domain | STAR domain [SCOP:d.129.3.2] |
3 | [PDB:1em2] | STAR-related lipid transport domain of MLN64; Homo sapiens (human) | 2.43/108 |
| Ring hydroxylases α-chain | Ring hydroxylating alpha subunit catalytic domain [SCOP:d.129.3.3] |
9 | [PDB:1o7n] | Naphthalene 1,2-dioxygenase; Pseudomonas putida | 2.42/86 |
| Phosphatidylinositol transfer proteins | Phosphatidylinositol transfer protein, PITP [SCOP:d.129.3.4] |
4 | [PDB:1t27] | Phosphatidylinositol transfer protein alpha; Rattus norvegicus (rat) | 2.28/111 |
| AHA1 domain | Aha1 domain [SCOP:d.129.3.5] |
8 | [PDB:1xfs] | Hypothetical protein NE0264; Nitrosomonas europaea | 2.31/115 |
| Polyketide cyclases | Oligoketide cyclase/dehydrase-like [SCOP:d.129.3.6] |
2 | [PDB:1t17] | Hypothetical protein CC1736; Caulobacter crescentus | 2.59/114 |
| SMU440-related | - | 1 | [PDB:2b79] | Hypothetical protein SMU440; Streptococcus mutans | 2.65/132 |
| PA1206-related | - | 1 | [PDB:2ffs] | Hypothetical protein PA1206; Pseudomonas aeruginosa | 2.53/115 |
| Homotrimeric ring hydroxylases | - | 2 | [PDB:1z01] | 2-Oxo-1,2-dihydroquinoline 8-monooxygenase; Pseudomonas putida | 2.47/99 |
| CalC-related | - | 1 | [PDB:1zxf] | Self-sacrificing resistance protein CalC; Micromonospora echinospora | 2.93/87 |
| CoxG family | - | 2 | [PDB:2ns9] | Hypothetical protein APE2225; Aeropyrum pernix | 2.53/117 |
aNumber of structures of proteins with non-identical sequences in PDB.
bRoot mean square distance of backbone atoms of all aligned residues and number of aligned residues in a structural alignment with Bet v 1 [PDB:1bv1].