Figure 5.

A comparison of different alignment algorithms on 50 50k simulated nine-way alignments (Blanchette et al. 2004). Graphs show representative alignment pair comparisons. Data for MAVID (Blanchette et al. 2004), TBA (Blanchette et al. 2004), and Mlagan (Brudno et al. 2003a) computed using the latest publicly available release. Data for Dialign (Morgenstern et al. 1998; Morgenstern 1999), ClustalW (Thompson et al. 1994), and Dialign-Chaos (Brudno et al. 2004) reproduced from Blanchette et al. (2004).