Table 2.

Single nucleotide polymorphisms (SNPs) and haplotypes

	SNPs			Haplotypes
Gene	Reference number	Position*	MAF**	Haplotype ID	Structure***	Freq**
CETP	rs17231506	5’F	30 %	CETP-A	CGCACGGTCACCT	20 %
	rs4783961	5’F	49 %	CETP-B	TACCTGGTCGTCT	14 %
	rs17245715	5’F	10 %	CETP-C	CACATATTCGTCT	6 %
	rs1800775	5’F	49 %	CETP-D	CGTCTGGTCGCCT	7 %
	rs708273	In2	30 %	CETP-E	TACCTGGTCGCGT	6 %
	rs12720922	In2	18 %	CETP-Others§	---------------------------	47 %
	rs9939224	In2	21 %
	rs11076174	In2	8 %
	rs5883	Ex9S	5 %
	rs4784744	In10	35 %
	rs1800774	In12	35 %
	rs289742	3’F	13 %
	rs12720917	3’F	15 %
IL8	rs4073	5’F	48 %	IL8-A	ATC	51 %
	rs2227307	In1	47 %	IL8-B	TGT	42 %
	rs2227543	In3	42 %	IL8-C	TGC	3 %
				IL8-Others§	-----	3 %
PPARA	rs4253623	In2	13 %	PPARA-A	GGGCAT	29 %
	rs135543	In2	29 %	PPARA-B	AAGTGT	22 %
	rs4253655	In2	16 %	PPARA-C	GAGCGC	11 %
	rs4253699	In2	20 %	PPARA-D	GGATGT	9 %
	rs4253701	In2	10 %	PPARA-E	AAGTGT	6 %
	rs4253765	In6	19 %	PPARA-Others§	------------	23 %
TLR4	rs2770150	5’F	27 %	TLR4-A	GCTGCACCGAGT	27 %
	rs1927914	5’F	36 %	TLR4-B	ACTGCACCGAGT	22 %
	rs7864330	In1	6 %	TLR4-C	ACTGCACCCAGT	14 %
	rs1927911	In1	28 %	TLR4-D	ATTACACCGAGT	7 %
	rs11536878	In3	12 %	TLR4-E	ATTAAACCGGGT	6 %
	rs4986790	Ex4N	6 %	TLR4-F	ATGGCGTCGAGC	5 %
	rs4986791	Ex4N	5 %	TLR4-Others§	---------------------------	18 %
	rs7869402	Ex4U	4 %
	rs11536889	3’F	15 %
	TLR4-17050	3’F	16 %
	TLR4-17723	3’F	5 %
	rs1927906	3’F	10 %

^*SNP position descriptions: F=flanking, Ex=exon, In=intron, N=non-synonymous, U= untranslated.

^**SNP minor allele frequencies (MAF) and probability-weighed haplotype frequencies among controls.

^***Haplotype structures in order of SNP list.

^§Others, a haplotype group that includes all other haplotypes with frequencies less than 5%.