Table 1.
Predicted genes and their designated functions.
| Gene | Product length (a.a.) | Best BLAST Hita | E-value | Similarity | Designationb |
|---|---|---|---|---|---|
| Hp1 | 259 | ABE85118 | 5.0E−08 | 49/101 | Hypotheticalc |
|
| |||||
| HSF (similar to HSFA9) | 337 | AAM43804 | 3.4E−47 | 185/320 | HSF transcription factor |
|
| |||||
| NPR1 | 604 | AAT57640 | 0.0E+00 | 604/604 | NPR1 disease resistance |
|
| |||||
| Hp2 | 259 | none | Hypotheticalc | ||
|
| |||||
| Integrase | 1516 | ABE91091 | 0.0E+00 | 903/1535 | Integrase (copia type) |
|
| |||||
| Hp3 | 403 | ABD83280 | 1.1E−124 | 315/325 | Unknownd |
|
| |||||
| Reverse transcriptase (RT) | 1501 | ABE83303 | 0.0E+00 | 996/1503 | Gypsy-type retrotransposon |
|
| |||||
| Hp4 | 302 | CAH67120 | 1.0E−13 | 78/177 | Hypotheticalc |
|
| |||||
| Hp5 | 263 | ABD83301 | 1.0E−09 | 41/63 | Hypotheticalc |
|
| |||||
| Hp6 | 222 | none | Hypotheticalc | ||
|
| |||||
| Hp7 | 593 | ABD83280 | 4.1E−60 | 186/282 | Unknownd |
|
| |||||
| ORF1 of Coe1 (a composite of class I and class 2 elements) [25] | 188 | NP_199616.1 | 1e−17 | 106/192 | Hypothetical (retroelement-like gene) |
|
| |||||
| Coe1 (transposon gene) | 1399 | ABE82848 | 0.0E−00 | 604/956 | Transposon |
|
| |||||
| ORF2 of Coe1 (an integrase pseudogene) | 297 | ABA95677 | 4.0E−70 | 177/298 | Rvt2 domain integrase pseudogene |
|
| |||||
| Calmodulin-binding protein (CaMP) | 525 | NP_974673 | 7.0E−161 | 361/495 | Signal-peptide calmodulin-binding protein |
|
| |||||
| RT (reverse transcriptase) | 198 | ABF81417 | 3.0E−37 | 126/213 | RT-like gene |
|
| |||||
| CK1-class protein kinase (CK1PK) | 473 | BAB92346 | 0.0E+00 | 411/476 | CK1-class dual-specificity protein kinase |
aGenBank accession number or protein ID of the best BLAST hit, followed by the E-value and percent (similar/total amino acids) similarity between the query and the best hit.
bDesignation based on the deductions possible via bioinformatics tools listed in Section 2. Functional classification based on the result of protein BLAST search.
cNA: not applicable; putative function of the product was not identified.
dSimilar to FGENESH 21 [26].