Table 1.

Average statistics on protein–protein docking decoys

Classification	Ligand	Receptor	Near-native	Hitsd	Number of
	RMSDa	RMSDb	RMSDc		complexes
enzyme/inhibitor	1.69	1.49	2.77	9.1	21
antibody/antigen	1.04	0.92	3.37	7.4	5
others	1.46	1.87	3.23	7.8	35

^aUnbound/bound ligand C^α RMSD (Å).

^bUnbound/bound receptor C^α RMSD (Å).

^cLigand backbone RMSD (Å) in the closest to the native structure near-native match.

^dNumber of near-native matches per complex.