Table 3.
Allele frequencies for selected polymorphisms in the Papua New Guinea (PNG) subpopulations with deviations from Hardy/Weinberg Equilibrium (HWE).
| Gene | Allele | Eastern Highlands | Nasioi | Coastal |
|---|---|---|---|---|
| Arntl | ||||
| ss95215856 | G | 0.93 | 0.98 | 0.98 |
| Arntl2 | ||||
| rs5797225 | GTT (7) | - | - | - |
| GTT (8) | 0.83 | 0.74 | 0.57+ | |
| GTT (9) | 0.17 | 0.24 | 0.43 | |
| GTT (10) | - | 0.02 | - | |
| rs7137588 | G | 0.57 | 0.89 | 0.78 |
| rs4964059 | C | 0.57 | 0.35 | 0.80 |
| Clock | ||||
| rs1801260 | T | 0.88 | 0.85 | 0.77 |
| ss95215860 | A | 1.00 | 1.00 | 0.89 |
| Per2 | ||||
| rs2304669 | A | 0.95 | 1.00 | 0.86 |
| Per3 | ||||
| rs228697 | C | 0.76 | 0.89 | 0.84+ |
| AB047536 | 5-repeat | 0.74 | 0.46 | 0.57 |
| rs10462021 | A | 1.00 | 0.93 | 1.00 |
| AANAT | ||||
| rs4238989 | G | 0.55 | 0.48 | 0.50 |
*
indicates deviation from HWE at p < 0.05
+
indicates deviation from HWE at p < 0.01
Eastern Highlands = Gimi and Goroka
Nasioi = Bouganville
Coastal = Sepik and Madang