Table 1.
The predicted splicing parameters and RPA results
| Exon/intron/exon combination |
||||
|---|---|---|---|---|
| 53/53/54 | 56/56/57 | 60/60/61 | 63/63/64 | |
| CVa | 0.90, 0.60 | 0.84, 0.97 | 0.94, 0.98 | 0.95, 0.90 |
| ΔDGo37b | −7.7 | −10.4 | −11.7 | −10.6 |
| Total RNA | 68.7 ± 27.8 | 2.4 ± 1.2c | 342.2 ± 24.3d | 159.9 ± 9.4c |
| Unspliced RNA | 20.0 ± 9.1 | 1.6 ± 1.2 | 87.1 ± 11.2d | 20.4 ± 9.1 |
| Spliced RNA | 48.8 ± 20.6 | 0.8 ± 0.2 | 255.1 ± 20.6d | 139.5 ± 6.4d |
| S/U ratioe | 2.5 ± 0.3 | 1.0 ± 0.6 | 3.0 ± 0.4 | 7.1 ± 0.9d |
| % of splicing | 71.1 | 31.3c | 74.5 | 87.2c |
Consensus splicing values (CV) at the 5′ and the 3′ ends of each indicated intron (from ref. 18). A higher value indicates a better match.
Free energy exchange during U1snRNA annealing (Kcal/mole). The more negative the value, the more favorable the annealing.
Values are statistically different from each other in the same category (P < 0.014).
Values are statistically different from other exon/intron/exon combinations in the same category (P < 0.016).
The ratio of spliced (S) to unspliced (U) RNA transcript.