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. 2008 Nov 28;4(11):e1000282. doi: 10.1371/journal.pgen.1000282

Table 3. Associations of rs174548 (FADS1) with concentrations and ratios between the concentrations of matching pairs of glycerophospholipid species.

enumerator denominator mean ncases p-value estimate explained variance
Single metabolites (four double bonds)
PC a C20:4* 1 5.094 284 5.3×10−7 −0.293 8.58%
PC aa C34:4 1 3.249 284 3.3×10−3 −0.174 3.04%
PC aa C36:4 1 399.407 284 4.5×10−8 −0.318 10.11%
PC aa C38:4 1 209.050 284 4.9×10−6 −0.268 7.17%
PC ae C36:4 1 35.160 284 1.7×10−3 −0.186 3.46%
PC ae C38:4 1 30.117 284 1.4×10−4 −0.224 5.03%
PE aa C38:4 1 5.357 284 0.13 −0.090 0.81%
PI aa C38:4* 1 27.025 284 0.012 −0.149 2.22%
Single metabolites (three double bonds)
PC a C20:3* 1 2.461 208 0.86 −0.013 0.02%
PC aa C34:3 1 30.751 284 0.21 0.075 0.56%
PC aa C36:3 1 250.496 284 0.56 0.035 0.12%
PC aa C38:3 1 123.002 284 0.66 −0.027 0.07%
PC ae C36:3 1 19.697 284 0.17 0.081 0.66%
PC ae C38:3 1 10.641 284 0.74 0.020 0.04%
PE aa C38:3 1 1.623 132 0.92 −0.009 0.01%
PI aa C38:3* 1 7.791 221 0.077 0.120 1.43%
Ratios between metabolite concentrations
PC a C20:4* PC a C20:3* 2.224 208 2.9×10−8 −0.374 13.98%
PC aa C34:4 PC aa C34:3 0.107 284 4.2×10−7 −0.295 8.72%
PC aa C36:4 PC aa C36:3 1.613 284 2.4×10−22 −0.535 28.62%
PC aa C38:4 PC aa C38:3 1.708 284 2.1×10−17 −0.476 22.66%
PC ae C36:4 PC ae C36:3 1.832 284 7.3×10−8 −0.313 9.81%
PC ae C38:4 PC ae C38:3 2.888 284 9.7×10−9 −0.333 11.07%
PE aa C38:4 PE aa C38:3 3.693 132 0.013 −0.216 4.64%
PI aa C38:4* PI aa C38:3* 3.582 221 1.5×10−8 −0.370 13.69%

Association of SNP rs174548 (FADS1) with concentrations and ratios between the concentrations of matching pairs of glycerophospholipid species with three- (denominator) and four-fold (enumerator) unsaturated carbon bonds in their fatty acid side chains; in cases where alternative assignments of the metabolites are possible, these are indicated by a ‘*’; reported are the mean (µM), the number of cases for which metabolite concentrations were obtained (ncases), the p-value of the association, the regression coefficient using an additive genetic model (estimate), and the proportion of the observed variance that can be explained by including the genetic polymorphism in the additive genetic model.