TABLE 3.
Inferred human–chimp expression evolution parameters from probe data
| Data set | HC | HCR | HCO | HCRO |
|---|---|---|---|---|
| t1a | 1.85 (1.72–2.01) | 1.06 (1.01–1.12) | 1.67 (1.59–1.78) | 0.81 (0.80–0.83) |
| t2 | 0.60 (0.53–0.67) | 0.50 (0.47–0.53) | 0.36 (0.32–0.40) | 0.41 (0.40–0.43) |
| t3 | 0.87 (0.76–0.98) | 0.07 (0.00–0.14) | 2.64 (2.59–2.68) | |
| t4 | 1.13 (1.02–1.23) | 4.51 (4.20–4.86) | 0.08 (0.07–0.09) | |
| t5 | 0.68 (0.66–0.69) | |||
| t6 | 0.57 (0.56–0.58) | |||
| σ | 0.06 (0.05–0.10) | 0.24 (0.22–0.26) | 0.06 (0.05–0.08) | 0.06 (0.05–0.06) |
| a | 0.53 (0.50–0.55) | 0.31 (0.29–0.33) | 0.35 (0.34–0.37) | −0.49 (−0.49–0.48) |
| p | 0.01 (0.00–0.01) | 0.01 (0.01–0.01) | 0.01 (0.01–0.01) | 0.21 (0.02–0.70) |
| var | 0.28 (0.26–0.31) | 0.16 (0.15–0.16) | 0.13 (0.12–0.14) | 0.24 (0.23–0.24) |
| div × var | 0.70 (0.68–0.72) | 0.25 (0.24–0.25) | 0.26 (0.26–0.27) | 0.29 (0.29–0.30) |
| log2(t1/t2) | 1.62 (1.46–1.81) | 1.10 (0.99–1.21) | 2.21 (2.06–2.40) | 0.97 (0.92–1.05) |
| t1/t2 | 3.07 (2.76–3.50) | 2.14 (1.99–2.32) | 4.63 (4.17–5.3) | 1.96 (1.89–2.08) |
| n | 50,759 | 44,668 | 40,160 | 55,802 |
| ESS | 191 | 180 | 171 | 20 |
Estimates (posterior medians and 95% credible intervals) of branch lengths and model parameters from probe level data are shown, using various choices of outgroups. For inferences on data without quantile–quantile normalization see supplemental Table 5.
a
Parameters are as in Table 2.