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. 2008 Nov;180(3):1725–1742. doi: 10.1534/genetics.108.091942

TABLE 2.

Genetic expectation of variance components of L1 + L2 and L1L2 when the base population was the DH population

ANOVA L1 + L2 L1L2 Inline graphic
One way Inline graphic = (1 − 2r1)2Inline graphic Inline graphic = (1 − 2r1)2Inline graphic d1/a1
Two way Inline graphic = (1 − 2r1)2(a1 + Inline graphic)2 Inline graphic = (1 − 2r1)2(d1 + Inline graphic)2
Inline graphic = (1 − 2r2)2(a2 + Inline graphic)2 Inline graphic = (1 − 2r2)2(d2 + Inline graphic)2
Inline graphic = (1 − 2r1)2(1 − 2r2)2Inline graphic Inline graphic = (1 − 2r1)2(1 − 2r2)2Inline graphic Inline graphic/Inline graphic
Three way Inline graphic = (1 − 2r1)2(a1 + Inline graphic)2 Inline graphic = (1 − 2r1)2(d1 + Inline graphic + Inline graphic + Inline graphic)2
Inline graphic = (1 − 2r2)2(a2 + Inline graphic + Inline graphic + Inline graphic)2 Inline graphic = (1 − 2r2)2(d2 + Inline graphic + Inline graphic + Inline graphic)2
Inline graphic = (1 − 2r3)2(a3 + Inline graphic + Inline graphic + Inline graphic)2 Inline graphic = (1 − 2r3)2(d3 + Inline graphic + Inline graphic + Inline graphic)2
Inline graphic = (1 − 2r1)2(1 − 2r2)2(Inline graphic + Inline graphic)2 Inline graphic = (1 − 2r1)2(1 − 2r2)2(Inline graphic + Inline graphic)2
Inline graphic = (1 − 2r1)2(1 − 2r3)2(Inline graphic + Inline graphic)2 Inline graphic = (1 − 2r1)2(1 − 2r3)2(Inline graphic + Inline graphic)2
Inline graphic = (1 − 2r2)2(1 − 2r3)2(Inline graphic + Inline graphic)2 Inline graphic = (1 − 2r2)2(1 − 2r3)2(Inline graphic + Inline graphic)2
Inline graphic = (1 − 2r1)2(1 − 2r2)2(1 − 2r3)2Inline graphic Inline graphic = (1 − 2r1)2(1 − 2r2)2(1 − 2r3)2Inline graphic Inline graphic/Inline graphic

Inline graphic (i = 1 ∼ K), Inline graphic (i < j, i = 1 ∼ K, j = 2 ∼ K), and Inline graphic (i < j < l, i = 1 ∼ K, j = 2 ∼ K, l = 3 ∼ K) are denoted as variance components of a single marker, two markers, and three markers. The other parameters are the same as in Table 1.