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. 2008 Dec;49(12):2648–2656. doi: 10.1194/jlr.M800155-JLR200

TABLE 2.

APOH SNP positions and minor allele frequencies in African Americans, Mexican Americans, and European Americans

MAF
Position Reference Allele Functional Location AA MA EA
−1283 rs8178818 C/G Promoter 0 0.020 0.002
−1218 rs8178819 G/A Promoter 0.012 0.025 0.080
−1054 rs8178897 T/G Promoter 0.011 0 0
−758 rs8178820 A/G Promoter 0.051 0.090 0.266
−700 rs3760291 C/A Promoter 0.064 0.085 0.257
−643 hcv268405 T/C Promoter 0.123 0.234 0.133
−627 rs8178898 A/C Promoter 0.039 0.005 0
−581 rs8178899 A/C Promoter 0.051 0.008 0.001
−32 rs8178822 C/A 5′ UTR 0.058 0.042 0.069
71 rs8178901 C/T Splicing 0.047 0.001 0
3333a rs8178833 G/A Ser88Asn 0.014 0.027 0.041
5247 rs8178835 T/C Intron 3 0.439 0.452 0.227
5956 rs8178838 A/G Intron 4 0.081 0.050 0.072
6482 rs3785617 A/G Intron 4 0.267 0.172 0.378
8627 reference 14 A/C Splicing 0.080 0.049 0.070
8643a rs1803122 T/C Ile122Thr 0.083 0.048 0.069
8682a rs8178847 G/A Arg135His 0.084 0.050 0.070
8698 rs8178925 A/G Ser140Ser 0.010 0 0
8700a reference 14 C/A Ala141Asp 0.019 0 0
8853 hcv265411 T/C Intron 5 0.119 0.360 0.393
8906 rs8178926 G/A Intron 5 0.059 0 0
9926 rs2215415 T/C Intron 5 0.132 0.360 0.395
10099 rs7212060 A/C Intron 5 0.347 0.486 0.703
13255 rs4366742 G/A Intron 6 0.119 0.360 0.394
13324 rs8178857 C/A Intron 6 0.097 0.075 0.111
13524 rs2873966 C/T Intron 6 0.187 0.125 0.306
14740 rs3176975 G/T Val247Leu 0.470 0.542 0.773
14917 rs4791077 T/G Cys306Gly 0.007 0.049 0.026
14969 rs1544556 C/T Intron 7 0.051 0.089 0.268
15937 rs8178943 T/G Intron 7 0.097 0.001 0
15957 rs4791079 C/A Intron 7 0.195 0.365 0.396
16219 rs4790914 C/G Intron 7 0.187 0.364 0.393
17212a rs8178862 G/C Thr316Ser 0.005 0.041 0.061
18368 rs8178818 G/A 3′ Flanking region 0.110 0.260 0.143
18774 rs8178819 T/G 3′ Flanking region 0.114 0.263 0.144
18801 rs8178897 A/T 3′ Flanking region 0.278 0.396 0.419

SNP, single-nucleotide polymorphism; AA, African American; MA, Mexican American; EA, European American; MAF, minor allele frequency; UTR, untranslated region.

a

SNPs that determine known apoH protein charge isoforms.