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. 2008 Sep 26;4(9):e1000188. doi: 10.1371/journal.pcbi.1000188

Figure 1. Schematic representation of cavities in a homodimeric molecule.

Figure 1

Cavity-lining (CL) atoms are in filled circles, black for those in tertiary structures and blue in interfaces. Non-cavity-non-surface (NCNS) atoms in the tertiary structure are in open, black circles and those in the interface are in open, blue circles. Surface atoms are in red. Cavities within the tertiary structure (CT) and interface (CI) are distinct from the surface pockets (P).