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. Author manuscript; available in PMC: 2009 Jun 11.
Published in final edited form as: FEBS Lett. 2008 May 15;582(13):1835–1839. doi: 10.1016/j.febslet.2008.05.003

Table 1.

Hydrogen exchange rate constants of the imino protons, kex, for Macugen free and in the HBD-Macugen and VEGF-Macugen complexes (s−1)

Base Pair Imino proton Free Macugen
HBD-Macugen
VEGF-Macugen
15 °C 15 °C 35 °C 35 °C
G1·C27 G27 76 ± 5 16 ± 5 >400a >400a
G2·C26 G2 ≤2.1b <1.5c,d <1.5c,d <1.5c,d
G3·C25 G3 ≤2.1b <1.5c <1.5c <1.5c
A4·U24 U24 >400a 4.2 ± 0.5 33 ± 2 20 ± 4
n. d. f U20 >400a >400a >400a 44 ± 5
U6·A19 U6 >400a 2.7 ± 0.5 48 ± 3 29 ± 8
C7·U18 U18 >400a <1.5c,e 16 ± 1 8 ± 3
A8·U17 U17 >400a <1.5c <1.5c <1.5c
G9·C16 G9 9.0 ± 0.6 <1.5c,e <1.5c <1.5c
U10·G15 U10 32 ± 2 <1.5c,d <1.5c,d <1.5c,d
G15 25 ± 1 <1.5c <1.5c <1.5c
a

No resonances were observed for these imino protons under these conditions. Simulated two-site chemical exchange of the imino protons with water yielded a lower limit of 400 s−1 for these exchange rates (data not shown).

b

The G2 and G3 resonances overlap and only an upper limit for each proton is reported.

c

Only an upper limit of kex < 1.5 s−1 is reported due to a potential NOE with water interfering with measurement of the exchange rate (see text).

d

The G2 and U10 resonances overlap and only an upper limit on the kex for each proton is reported.

e

The G9 and U18 resonances overlap and only an upper limit on the kex for each proton is reported.

f

The base pair for U20 was not determined.