TABLE 1.
Name | Target gene | Sequence (5′ → 3′)a | Restriction site | Function |
---|---|---|---|---|
PgpdAAfNot_up | gpdA | GCG GCC GCA GAT TCT AGA AGT CCT G | NotI | Amplification of the gpdA promoter |
PgpdAAfBglATG | gpdA | AGA TCTCAT TGT GTA GAT TCG TCT GGT AC | BglII | Amplification of the gpdA promoter |
Anchored oligo(dT)20 | mRNA | NVT TTT TTT TTT TTT TTT TTT T | Generation of cDNA | |
BglAfGPDcDNA_up | gpdA | AGA TCT GCC ACT CCC AAG GTT GG | BglII | Amplification of gpdA cDNA |
HindAfGPDcDNA_do | gpdA | AAG CTT ACT GGG AAT CGA CCT TGG | HindIII | Amplification of gpdA cDNA |
LucBgl_up | luc | AGA TCT GAC GCC AAA AAC ATA AAG AAA GG | BglII | Amplification of luc |
LucHind_down | luc | AAG CTT ACA CGG CGA TCT TTC CGC | HindIII | Amplification of luc |
LucMi_up | luc | GAT GTC CAC CTC GAT ATG TG | Control primer | |
Not_ptrA_up_for | ptrA | GCG GCC GCT TGA TTA CGG GAT CCC ATT GG | NotI | Amplification of ptrA |
Not_ptrA_dow_rev | ptrA | GCG GCC GCG TAT TAT ACT GTC TTT CTT GTT ACA | NotI | Amplification of ptrA |
cDNAgpdAAf_up | gpdA | CGT CGA TGC TCC CTC CAA C | RT-PCR with gpdA | |
cDNAgpdAAf_do | gpdA | GGA ATC GAC CTT GGC GAT G | RT-PCR with gpdA | |
lucProbe_up | luc | GAT GGA ACC GCT GGA GAG C | luc probe/RT-PCR with luc | |
lucProbe_mi_rev | luc | CCA AAA CCG TGA TGG AAT GGA AC | luc probe/RT-PCR with luc | |
AfCitAcode_up | citA | GCA AGG TCA TCG GCG AGG | RT-PCR with citA | |
AfCitAcode_do | citA | GTT GTC ACC GTA GCC GAG C | RT-PCR with citA | |
act_Afum_for_II | act1 | GCT TTG CTA CGT CGC TCT CG | RT-PCR with act1 | |
act_Afum_rev_II | act1 | GGA GGA GCA ATG ATC TTG ACC | RT-PCR with act1 |
Boldface type indicates restriction sites, and italic type indicates the ATG codon in reverse complement orientation.