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. 2008 Sep 26;74(22):7023–7035. doi: 10.1128/AEM.01288-08

TABLE 1.

Oligonucleotides used in this study

Name Target gene Sequence (5′ → 3′)a Restriction site Function
PgpdAAfNot_up gpdA GCG GCC GCA GAT TCT AGA AGT CCT G NotI Amplification of the gpdA promoter
PgpdAAfBglATG gpdA AGA TCTCAT TGT GTA GAT TCG TCT GGT AC BglII Amplification of the gpdA promoter
Anchored oligo(dT)20 mRNA NVT TTT TTT TTT TTT TTT TTT T Generation of cDNA
BglAfGPDcDNA_up gpdA AGA TCT GCC ACT CCC AAG GTT GG BglII Amplification of gpdA cDNA
HindAfGPDcDNA_do gpdA AAG CTT ACT GGG AAT CGA CCT TGG HindIII Amplification of gpdA cDNA
LucBgl_up luc AGA TCT GAC GCC AAA AAC ATA AAG AAA GG BglII Amplification of luc
LucHind_down luc AAG CTT ACA CGG CGA TCT TTC CGC HindIII Amplification of luc
LucMi_up luc GAT GTC CAC CTC GAT ATG TG Control primer
Not_ptrA_up_for ptrA GCG GCC GCT TGA TTA CGG GAT CCC ATT GG NotI Amplification of ptrA
Not_ptrA_dow_rev ptrA GCG GCC GCG TAT TAT ACT GTC TTT CTT GTT ACA NotI Amplification of ptrA
cDNAgpdAAf_up gpdA CGT CGA TGC TCC CTC CAA C RT-PCR with gpdA
cDNAgpdAAf_do gpdA GGA ATC GAC CTT GGC GAT G RT-PCR with gpdA
lucProbe_up luc GAT GGA ACC GCT GGA GAG C luc probe/RT-PCR with luc
lucProbe_mi_rev luc CCA AAA CCG TGA TGG AAT GGA AC luc probe/RT-PCR with luc
AfCitAcode_up citA GCA AGG TCA TCG GCG AGG RT-PCR with citA
AfCitAcode_do citA GTT GTC ACC GTA GCC GAG C RT-PCR with citA
act_Afum_for_II act1 GCT TTG CTA CGT CGC TCT CG RT-PCR with act1
act_Afum_rev_II act1 GGA GGA GCA ATG ATC TTG ACC RT-PCR with act1
a

Boldface type indicates restriction sites, and italic type indicates the ATG codon in reverse complement orientation.