Table 2.
Summary of 40 most abundant antisense UniGenes
| UniGene | Annotation | Functional category | total tag count | PM | FM | Sense tag(s) Present? |
| gnl|UG|Ta#S17980503 | no hit | Unknown | 374 | 0 | 2 | No |
| gnl|UG|Ta#S12872250 | no hit | Unknown | 338 | 0 | 4 | No |
| gnl|UG|Ta#S12922882 | Alpha/beta-gliadin A-II precursor (Prolamin) | Storage | 238 | 5 | 5 | Yes |
| gnl|UG|Ta#S32420068 | PREDICTED: similar to rRNA intron-encoded homing endonuclease | Reproduction | 190 | 1 | 3 | Yes |
| gnl|UG|Ta#S32610130 | no hit | Unknown | 166 | 0 | 1 | No |
| gnl|UG|Ta#S18010719 | putative inositol-(1,4,5) trisphosphate 3-kinase [Oryza sativa] | Signalling | 97 | 0 | 1 | No |
| gnl|UG|Ta#S16057965 | putative argonaute protein [Oryza sativa] | Reproduction | 85 | 0 | 2 | No |
| gnl|UG|Ta#S17985265 | putative AT-hook DNA-binding protein [Oryza sativa] | Reproduction | 84 | 0 | 1 | No |
| gnl|UG|Ta#S15823985 | no hit | Unknown | 83 | 0 | 1 | No |
| gnl|UG|Ta#S12923304 | gamma-gliadin [Triticum aestivum] | Storage | 64 | 5 | 0 | Yes |
| gnl|UG|Ta#S26027296 | UBX domain, putative [Oryza sativa (japonica cultivar-group)] | Unknown | 60 | 0 | 1 | No |
| gnl|UG|Ta#S12923123 | gliadin gamma | Storage | 56 | 3 | 0 | Yes |
| gnl|UG|Ta#S12923126 | low molecular weight glutenin subunit LMW-Di31 [Triticum turgidum] | Storage | 48 | 1 | 1 | Yes |
| gnl|UG|Ta#S17988646 | putative glucose-6-phosphate dehydrogenase [Oryza sativa] | Metabolism | 47 | 0 | 1 | No |
| gnl|UG|Ta#S19133035 | low-molecular-weight glutenin subunit group 3 type II | Storage | 46 | 5 | 0 | Yes |
| gnl|UG|Ta#S16466298 | no hit | Unknown | 44 | 0 | 2 | No |
| gnl|UG|Ta#S22389847 | no hit | Unknown | 39 | 0 | 2 | Yes |
| gnl|UG|Ta#S12922884 | alpha-gliadin [Triticum aestivum] | Storage | 35 | 1 | 0 | Yes |
| gnl|UG|Ta#S32643313 | OSJNBa0070C17.22 (CpG binding domain*) | Reproduction | 34 | 0 | 2 | No |
| gnl|UG|Ta#S13111511 | wound-inducible basic protein – kidney bean | Defense | 30 | 0 | 1 | No |
| gnl|UG|Ta#S18010204 | choline kinase [Oryza sativa] | Membrane | 29 | 0 | 1 | No |
| gnl|UG|Ta#S13179349 | no hit | Unknown | 27 | 0 | 3 | No |
| gnl|UG|Ta#S13005586 | gamma-gliadin [Triticum aestivum] | Storage | 25 | 1 | 0 | Yes |
| gnl|UG|Ta#S15880157 | no hit | Unknown | 24 | 1 | 0 | Yes |
| gnl|UG|Ta#S17883810 | putative serine/threonine protein phosphatase PP1 [Oryza sativa] | Signalling | 23 | 0 | 1 | No |
| gnl|UG|Ta#S12966614 | putative receptor protein kinase PERK1 [Oryza sativa] | Signalling | 23 | 0 | 1 | No |
| gnl|UG|Ta#S32583944 | unknown protein [Oryza sativa] | Unknown | 21 | 0 | 1 | No |
| gnl|UG|Ta#S16191894 | putative wall-associated protein kinase [Oryza sativa] | Signalling | 21 | 0 | 2 | No |
| gnl|UG|Ta#S12923306 | gamma-gliadin [Triticum aestivum] | Storage | 21 | 3 | 1 | Yes |
| gnl|UG|Ta#S17975314 | no hit | Unknown | 20 | 0 | 1 | No |
| gnl|UG|Ta#S32572951 | Nucleolar GTP-binding protein 1-like [Oryza sativa] | Signalling | 20 | 0 | 1 | No |
| gnl|UG|Ta#S22379110 | putative branched-chain alpha-keto acid decarboxylase E1 beta | Cell Wall | 20 | 0 | 1 | No |
| gnl|UG|Ta#S12917789 | no hit | Unknown | 20 | 0 | 1 | No |
| gnl|UG|Ta#S16228057 | no hit | Unknown | 20 | 0 | 1 | Yes |
| gnl|UG|Ta#S22368491 | protein phosphatase 2C, putative, expressed [Oryza sativa] | Signalling | 19 | 0 | 1 | No |
| gnl|UG|Ta#S16058509 | high-molecular-weight glutenin subunit Bx17 [Triticum aestivum] | Storage | 19 | 1 | 1 | Yes |
| gnl|UG|Ta#S12932494 | unknown protein; 58745–68005 [Arabidopsis thaliana] | Unknown | 19 | 0 | 1 | Yes |
| gnl|UG|Ta#S32736316 | no hit | Unknown | 18 | 1 | 0 | No |
| gnl|UG|Ta#S17886389 | LacZ-alpha [Shuttle vector pLPV111] | Unknown | 18 | 1 | 1 | No |
| gnl|UG|Ta#S32503514 | DNA polymerase delta small subunit, putative, expressed | Reproduction | 18 | 0 | 1 | No |
PM – Unique perfect match tags.
FM – Unique fuzzy matched tags
* – Annotation obtained by manual search