Table 5.
Transcripts significantly up- and downregulated when comparing HCR-T with LCR-T that were associated with a transcript name
| Identifier | UniGene ID | Symbol | Transcript Name | Ratio HCR-T/LCR-T | FDR Value |
|---|---|---|---|---|---|
| 1381593_x_at | Rn.25717 | Rt1-Ba | RT1 class II. locus Ba = MHC class II antigen | 0.19 | 0.03 |
| 1393795_at | Rn.59710 | Zfhx1b | zinc finger homeobox 1b | 0.23 | 0.04 |
| 1392334_at | Rn.25717 | Rt1-Ba | RT1 class II, locus Ba = MHC class II antigen | 0.26 | 0.03 |
| 1398595_at | Rn.17033 | Rbm5 | RNA binding motif protein 5 | 0.36 | 0.04 |
| 1387146_a_at | Rn.11412 | Ednrb | endothelin receptor type B | 0.37 | 0.04 |
| 1386637_at | Rn.64635 | Fgl2 | fibrinogen-like 2 | 0.39 | 0.04 |
| 1375739_at | Rn.7379 | Ehd4 | EH-domain containing 4 | 0.40 | 0.04 |
| 1377663_at | Rn.25153 | Rnd3 | Rho family GTPase 3 | 0.42 | 0.04 |
| 1371499_at | Rn.2091 | Cd9 | CD9 antigen | 0.47 | 0.03 |
| 1368506_at | Rn.11065 | Rgs4 | regulator of G-protein signaling 4 | 0.50 | 0.04 |
| 1387976_at | Rn.39351 | Slc9a3r2 | solute carrier family 9, isoform 3 regulator 2 | 0.51 | 0.04 |
| 1390399_at | Rn.107553 | Crebl2 | cAMP responsive element binding protein-like 2 | 0.53 | 0.04 |
| 1370504_a_at | Rn.1476 | Pmp22 | peripheral myelin protein 22 | 0.54 | 0.03 |
| 1384136_at | Rn.21291 | Rgd1564287 | similar to mKIAA0704 protein | 0.54 | 0.04 |
| 1369735_at | Rn.52228 | Gas6 | growth arrest specific 6 | 0.55 | 0.01 |
| 1394077_at | Rn.25153 | Rnd3 | Rho family GTPase 3 | 0.55 | 0.03 |
| 1388132_at | Rn.54645 | Sfpq | splicing factor proline/glutamine rich | 0.56 | 0.04 |
| 1382599_at | Rn.6282 | Igf1 | insulin-like growth factor 1 | 0.56 | 0.05 |
| 1397508_at | Rn.26598 | Ddx18 | DEAD box polypeptide 18 | 0.56 | 0.05 |
| 1395512_at | Rn.38637 | Crlf1 | cytokine receptor-like factor 1 | 0.57 | 0.03 |
| 1389533_at | Rn.7350 | Fbln2 | vibulin 2 | 0.57 | 0.03 |
| 1382998_at | Rn.20871 | Rnmt | RNA (guanine-7-) methyltransferase | 0.58 | 0.01 |
| 1386896_at | Rn.162107 | Khdrbs1 | KH domain containing. RNA binding | 0.62 | 0.04 |
| 1370956_at | Rn.106103 | Dcn | decorin | 0.63 | 0.04 |
| 1378369_at | Rn.17371 | Rgd1564008 | similar to dapper 1 | 0.64 | 0.04 |
| 1393324_at | Rn.6473 | Jam2 | junction adhesion molecule 2 | 0.66 | 0.02 |
| 1383269_at | Rn.19719 | Rnf2 | ring finger protein 2 | 0.66 | 0.04 |
| 1368223_at | Rn.7897 | Adamts1 | A disintegrin and metalloproteinase with thrombospondin motifs 1 | 0.72 | 0.04 |
| 1379304_at | Rn.44767 | Loc498171 | similar to inducible interleukin 11 | 0.74 | 0.05 |
| 1385298_at | Rn.73969 | Rgd1564851 | similar to putative anion transporter | 0.74 | 0.05 |
| 1378932_at | Rn.138078 | Srprb | signal recognition particle receptor B subunit | 1.22 | 0.05 |
| 1396486_x_at | Rn.170790 | Rgd1564162 | similar to Homo sapiens fetal lung specific | 1.23 | 0.04 |
| 1396382_at | Rn.62653 | Freq | frequenin homolog | 1.26 | 0.04 |
| 1389309_at | Rn.12294 | Sbno1 | Sno. strawberry notch homolog 1 | 1.27 | 0.04 |
| 1374146_at | Rn.27237 | Mad2l2 | MAD2 mitotic arrest deficient-like 2 | 1.29 | 0.04 |
| 1390120_a_at | Rn.116589 | Ring1 | ring finger protein 1 | 1.30 | 0.04 |
| 1393371_at | Rn.176450 | Zfp54 | zinc finger protein 54 | 1.32 | 0.04 |
| 1385815_at | Rn.11313 | Apeg1 | aortic preferentially expressed gene 1 | 1.32 | 0.04 |
| 1388747_at | Rn.162464 | Lcmt1 | leucine carboxyl methyltransferase 1 | 1.33 | 0.05 |
| 1373988_at | Rn.21749 | Loc690073 | similar to ferritin light chain 1 | 1.34 | 0.05 |
| 1388450_at | Rn.122513 | Ap1 gbpl | AP1 gamma subunit binding protein 1 | 1.34 | 0.04 |
| 1389335_at | Rn.47944 | Wdr22 | WD repeat domain 22 | 1.38 | 0.05 |
| 1377446_at | Rn.23848 | Rgd1563940 | similar to phosphoinositol 4-phosphate adaptor protein-2 | 1.38 | 0.04 |
| 1370025_at | Rn.94783 | Pip5k2c | phosphatidylinositol-4-phosphate 5-kinase type II γ | 1.40 | 0.04 |
| 1387178_a_at | Rn.87853 | Cbs | cystathionine β synthase | 1.40 | 0.03 |
| 1378100_at | Rn.103329 | Yeast4 | YEATS domain containing 4 | 1.40 | 0.04 |
| 1391703_at | Rn.144844 | Orc4l | origin recognition complex. subunit 4-like | 1.40 | 0.03 |
| 1373384_at | Rn.2153 | Loc691318 | protein phosphatase 2A. B subunit B γ-isoform | 1.42 | 0.04 |
| 1391282_at | Rn.13192 | Rgd1306962 | similar to dJ55C23.6 gene product | 1.45 | 0.05 |
| 1376368_at | Rn.19673 | Cuedc2 | CUE domain containing 2 | 1.48 | 0.05 |
| 1384302_at | Rn.186904 | Scl6a17 | solute carrier family 6 member 17 | 1.49 | 0.01 |
| 1399065_at | Rn.201337 | Rgd1561222 | similar to RNA binding protein with multiple splicing 2 | 1.59 | 0.05 |
| 1372171_at | Rn.139784 | Phc1 | polyhomeotic-like 1 | 1.71 | 0.05 |
| 1382105_at | Rn.23042 | Gnb5 | G protein 5b | 1.86 | 0.04 |
| 1379641_at | Rn.27421 | Rdx | radixin | 1.95 | 0.04 |
| 1394609_at | Rn.131797 | Ablim2 | actin-binding LIM protein 2 | 2.22 | 0.01 |
| 1370900_at | Rn.10092 | Myh4 | myosin heavy chain 4, skeletal muscle | 44.77 | 0.03 |
Transcripts identified as hypothetical proteins and clones, RIKEN cDNA, transcribed loci, and those that did not exist in UniGene were not included. In addition, transcripts with a mean present value at 0 from the arrays were not included in the list.