Table 3.
M gene sequencesc | |||||||||
---|---|---|---|---|---|---|---|---|---|
Subject ID | % L genes |
% Downstream genes |
No. L genes |
No. M genes |
Exon 2 65111116 |
Exon 3 153171174176180 |
Exon 4 204230233 236 |
Mutation | Predicted Δλmax (nm) |
JB122273b | 31.01 | 73.61 | 1 | 4 | I V Y | M V A I A | C T S V | L gene last | 0 |
RS072630b | 43.3 | 53.79 | 1 | 1 | not done | not done | not done | TISLIAVAIAMd | 0 |
DT090543b | 1.87 | 65.79 | 0 | 3 | T/I I/V S/Y | L V A I A | C/R T S V | C203R | 0 |
54a | 1.57 | 47.22 | 0 | 2 | T/I I/V S/Y | L V A I A | C/R T S V | C203R | 0 |
48a | 0.56 | 62.65 | 0 | 3 | I V Y | L/M V A I A | C/R T S V | C203R | 0 |
GP041934b | 0 | 51.92 | 0 | 2 | I V Y | M V A I A | C T S V | none found | 0 |
BS070784b | 0 | 55.3 | 0 | 2 | I V Y | M V A I A | C T S V | none found | 0 |
167a | 7.73 | 55.81 | 0 | 2 | I V Y | M V A I A | C T S V | none found | 0 |
BW112726b | 1.06 | 56.57 | 0 | 2 | I V Y | M V A I A | CT S V | none found | 0 |
SS091021b | 0 | 82.78 | 0 | 5 | I V Y | M V A I A | C T S V | none found | 0 |
VJ022026b | 0 | 70.37 | 0 | 3 | I V Y | M V A I A | C T S V | none found | 0 |
27a | 0 | 71.87 | 0 | 3 | I V Y | M V A I A | C T S V | none found | 0 |
JH082574b | 0.83 | 62.82 | 0 | 3 | I V Y | M V A I A | C T S V | none found | 0 |
166a | 8.09 | 57.84 | 0 | 2 | I V Y | M V A I A | C T S V | none found | 0 |
20a | 0 | 48.59 | 0 | 2 | I V Y | M V A I S | C T S V | none found | 0 |
DM081241b | 0.17 | 71.62 | 0 | 3 | I V Y | M V A V A | C T S V | G -425 Ae | 0 |
141a | 0 | 51.15 | 0 | 2 | I V Y | M V V V A | C T S V | none found | 0 |
AT052178b | 0 | 48.16 | 0 | 2 | I V Y | M V A/V I/V A | C T S V | none found | 0 |
174a | 6.4 | 55.36 | 0 | 2 | I V Y | M V A/V I/V A | C T S V | G -425 Ae | 0 |
CW121741b | 0.62 | 48.74 | 0 | 2 | T I/V S/Y | L/M V A I A | C T S V | none found | 0 |
RW061526b | 0.14 | 50.72 | 0 | 2 | T/I I/V S/Y | L V A I/V A | C T S V | none found | 0 |
10a | 3.05 | 47.17 | 0 | 2 | T/I I/V S/Y | L/M V A I A | C T S V | none found | 0 |
105a | 4.22 | 50.73 | 0 | 2 | T/I I/V S/Y | L/M V A I A | C T S V | none found | 0 |
RL052633b | 2.14 | 54.51 | 0 | 2 | T/I I/V S/Y | L/M V A I A | C T S V | none found | 0 |
178a | 3.25 | 57.15 | 0 | 2 | T/I I/V S/Y | L/M V A I S | C T S V | none found | 0 |
139a | 4.58 | 48.22 | 0 | 2 | T/I I/V S/Y | L/M V A/V I/V A | C T S V | none found | 0 |
TT010182b | 0 | 48.13 | 0 | 2 | T/I I/V S/Y | M V A I A | C T S V | none found | 0 |
JH101146b | 1.28 | 47.84 | 0 | 2 | T/I I S/Y | M V V V A | C T S V | G -425 Ae | 0 |
BM072774b | 1.3 | 54.98 | 0 | 2 | T/I I/V S/Y | M V A I S | C T S V | A -71 Ce | 0 |
CB050289b | 1.03 | 67.23 | 0 | 3 | T/I I/V S/Y | L/M V A I A | C T S V | none found | 0 |
JW092022b | 0.57 | 67.28 | 0 | 3 | T/I I/V S/Y | L/M V A I A | C T S V | none found | 0 |
JB111483b | 0.16 | 64 | 0 | 3 | T/I I/V S/Y | M V A I A | C T S V | none found | 0 |
HH122516b | 0 | 64.67 | 0 | 3 | T/I I/V S/Y | M V A I A | C T S V | none found | 0 |
49a | 0.39 | 66.38 | 0 | 3 | T/I I/V S/Y | M V A I A | C T S V | none found | 0 |
33a | 0.36 | 63.54 | 0 | 3 | T/I I/V S/Y | M V A I/V A | C T S V | none found | 0 |
126a | 2.92 | 66.67 | 0 | 3 | T/I I/V S/Y | M V V V A | C T S V | none found | 0 |
135a | 0.28 | 42.29 | 0 | 2 | T/I I/V S/Y | L/M V A I A | C T/I S/A V/M | none found | 1.5 |
Rayleigh matches were obtained with a Nagel Type I anomaloscope.
Rayleigh matches were obtained with a Neitz OT1 anomaloscope.
Single letter amino acid code: A = alanine, C = cysteine, I = isoleucine, L= leucine, M = methionine, R = arginine, S = serine, T = threonine, V = valine, Y = tyrosine.
Single letter amino acid code indicating amino acid found at positions 65, 111, 116, 153, 171, 174, 178, 180, 230, 233, and 236 of L pigment gene.
Mutation in promoter region of downstream gene, numbering convention counts backward from mRNA start site which is +1.