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Inter-strand (hydrogen bonding) and intra-strand (stacking interaction) interactions of a FapydG:C or G:C base pair in six different sequence contexts.
| sequence | hydrogen bond energy (kcal mol−1) | stacking energy (kcal mol−1) |
|---|---|---|
| AFA-AGA | 7.8±2.4 | −1.5±2.5 |
| AFC-AGC | 7.8±2.1 | −4.9±2.5 |
| AFG-AGG | 8.0±2.3 | −0.7±2.6 |
| TFA-TGA | 8.0±2.3 | 0.3±2.7 |
| TFC-TGC | 8.3±2.2 | −2.8±2.6 |
| TFT-TGT | 8.4±3.0 | 1.2±3.0 |
