TABLE 2.

The best average contact distances of the small membrane protein predictions using four probability sets; the effect of the number of iterations is also shown; all distances are in Å

PDB name	Iterations	Pair MIN-1	Pair AL-P	Trip MIN-2	Trip AL-T
1zoyD	5	11.58	9.33	17.20	13.25
	10	11.58	9.33	14.95	10.03
	20	11.58	9.27	14.95	10.03
1yewC	5	14.92	16.05	12.68	16.76
	10	14.92	16.05	12.68	15.86
	20	14.92	15.60	12.68	15.47
1eysL	5	10.42	17.30	13.12	15.22
	10	10.13	17.30	10.60	15.22
	20	10.13	17.21	10.60	13.38