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. Author manuscript; available in PMC: 2009 Nov 1.
Published in final edited form as: DNA Repair (Amst). 2008 Aug 30;7(11):1824–1834. doi: 10.1016/j.dnarep.2008.07.007

Table 1.

Changes in ESP fitted charges in the QM subsystem with respect to the Reactant (in electron units). Only changes larger than |0.1| units in a given step are reported.

Mg2+ Mn2+
TS1 TS2 Product TS1 TS2 Product
D427 .26 .28 .15 0. 0. 0.
D429 .11 0. −.12 −.1 0. −.1
D490 .10 .35 .28 0. .16 .28
dNTP-binding Mea −.31 −.19 −.16 0. .13 0.
catalytic Meb −.24 −.52 −.14 .16 −.12 0.
dC sugar 0. 0. −.10 0. 0. 0.
O3′ .10 .28 .48 0. .2 .46
PPi (including O) 0. −.10 −.39 0. 0. −.38
Pα (including O) 0. .14 .10 0. .12 .10
H2O (on struct. Me)c .12 .11 .1 0. 0. 0.
a

Metal (Me) that coordinates the PPi.

b

Metal that coordinates the O3′and Pα.

c

Water molecule coordinated to the dNTP-binding metal.