Table 3.

Percentage of time method is within 5% of the maximum observed power

Gene Set Size	Mean of log-ratios	Standard deviation of log-ratios	FET 1	FET 1/2	MAXMEAN-NR
2–5	0.02–0.24	< 1.0	31	32	55
		1.0+	63	53	20
	0.50–0.99	< 1.0	25	19	83
		1.0+	66	70	71
	1.0+	< 1.0	58	66	99
		1.0+	100	76	99
10–20	0.02–0.24	< 1.0	20	51	69
		1.0+	100	100	86
	0.50–0.99	< 1.0	41	56	97
		1.0+	97	90	88
	1.0+	< 1.0	93	98	100
		1.0+	100	100	100
50	0.02–0.24	< 1.0	24	59	82
		1.0+	100	100	99
	0.50–0.99	< 1.0	62	87	99
		1.0+	100	100	93
	1.0+	< 1.0	100	100	100
		1.0+	100	100	100