Table I.
Subfamily | Locus | Genomic V-D-D-J Clone Accession Number | cDNA | Remarks |
---|---|---|---|---|
IgM (rearranging): | ||||
Group 1 | G1 | DQ857386 | EU106186 | |
Group 2 | G2A | DQ192492, DQ192494 | AY583357, AY594650 | V1, V2 resp. may be allelesa |
G2B | DQ192493 | EU106179 | ||
ψG2C | DQ857389 | ND | Pseudogeneb | |
Group 3 | G3 | DQ857384 | EU106181 | |
Group 4 | G4A | Phage E2; DQ857390 | EU106182 | |
G4C | Phage B3; DQ857388 | EU106184 | G4C and G4G share VH and Cμ1 but not Cμ2 | |
G4G | Phage B2 | EU106185 | ||
G4E | Phage S5; DQ857387 | EU106182 | ||
Group 5 | G5 | DQ857385 | M92851, EU106180 | |
Group 6 | ψG6 | ND | AY609274c | VH only; pseudogene |
Group 7 | ψG7 | EU312153 | — | Pseudogened |
Group 8 | ψG8 | EU312152 | EU106187 | Pseudogenee |
IgM-related (germline-joined VDJ): | ||||
IgM1gj | H1gj | ND | AF327520 | Prominent in neonates |
IgM2gj | ψH2gj | EU312154 | — | Pseudogenef |
Complete H chains of the G2A members V1 and V2 differ by 1 bp in CDR2. These cDNA sequences carry no mutations.
G2C carries a one bp deletion in Cμ1 and a 13 bp deletion in Cμ2. Transcripts can be detected by RT-PCR.
The cDNA contains only VH and JH germline sequence. No C sequence is spliced to JH, none was found in BAC library.
No cDNA found by RT-PCR (Malecek and Hsu, data not shown); stop in J gene segment.
Leader intron cannot be spliced out; confirmed in cDNA. JH may be deleted; also missing in cDNA.
Not found in BAC library with CH3–4 probe.
ND, Not done; —, not detected.