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. Author manuscript; available in PMC: 2009 Jun 1.
Published in final edited form as: J Immunol. 2008 Jun 1;180(11):7461–7470. doi: 10.4049/jimmunol.180.11.7461

Table I.

Germline VH genes: IgM and IgM-derived loci detected by vh probe

Subfamily Locus Genomic V-D-D-J Clone Accession Number cDNA Remarks
IgM (rearranging):
 Group 1 G1 DQ857386 EU106186
 Group 2 G2A DQ192492, DQ192494 AY583357, AY594650 V1, V2 resp. may be allelesa
G2B DQ192493 EU106179
ψG2C DQ857389 ND Pseudogeneb
 Group 3 G3 DQ857384 EU106181
 Group 4 G4A Phage E2; DQ857390 EU106182
G4C Phage B3; DQ857388 EU106184 G4C and G4G share VH and Cμ1 but not Cμ2
G4G Phage B2 EU106185
G4E Phage S5; DQ857387 EU106182
 Group 5 G5 DQ857385 M92851, EU106180
 Group 6 ψG6 ND AY609274c VH only; pseudogene
 Group 7 ψG7 EU312153 Pseudogened
 Group 8 ψG8 EU312152 EU106187 Pseudogenee
IgM-related (germline-joined VDJ):
 IgM1gj H1gj ND AF327520 Prominent in neonates
 IgM2gj ψH2gj EU312154 Pseudogenef
a

Complete H chains of the G2A members V1 and V2 differ by 1 bp in CDR2. These cDNA sequences carry no mutations.

b

G2C carries a one bp deletion in Cμ1 and a 13 bp deletion in Cμ2. Transcripts can be detected by RT-PCR.

c

The cDNA contains only VH and JH germline sequence. No C sequence is spliced to JH, none was found in BAC library.

d

No cDNA found by RT-PCR (Malecek and Hsu, data not shown); stop in J gene segment.

e

Leader intron cannot be spliced out; confirmed in cDNA. JH may be deleted; also missing in cDNA.

f

Not found in BAC library with CH3–4 probe.

ND, Not done; —, not detected.