Table 2.
Genes Involved in strain-specific insertions.
| Position | Size | Genes Involved |
| H37Rv | ||
| 3551227–3552586 | 1359 | Intergenic region between Rv3185 (Probable transposase) and Rv3188 (Hypothetical protein) |
| H37Ra | ||
| 13627–14986 | 1359 | Insertion of the IS6110 element between Rv0010c (Probable conserved membrane protein) and Rv0011c (Hypothetical protein) |
| 1989343–1990797 | 1437 | Insertion of the IS6110 element on the ipl locus |
| CDC1551 | ||
| 804474–804691 | 217 | Intergenic region between rplW (50S ribosomal protein L23) and rplB (50S ribosomal protein L2) |
| 2341782–2341840 | 58 | MT2144 (Hypothetical protein) |
| F11 | ||
| 934662–936021 | 1359 | IS6110 insertion in intergenic region between hypothetical proteins TBFG_10851 and TBFG_10853 |
| 1945992–1947351 | 1359 | IS6110 insertion in Rv1724c (Hypothetical protein) |
| 1992354–1993713 | 1359 | IS6110 insertion in cut1 (Probable cutinase) |
| 1997360–1998719 | 1359 | IS6110 insertion in intergenic region between wag22 (PE-PGRS) and Rv1760 (Hypothetical protein) |
| 2004182–2005541 | 1359 | IS6110 insertion in intergenic region between hypothetical proteins Rv1765c and Rv1766 |
| 2017862–2019221 | 1359 | IS6110 insertion in cyp144 (Cytochome P450) |
| 2270442–2271801 | 1359 | IS6110 insertion in Rv2015c (Hypothetical protein) |
| 2349289–2350648 | 1359 | Intergenic region between Rv2077c (Possible conserved transmembrane protein) – Rv2078 (Hypothetical protein) |
| 2697325–2698684 | 1359 | IS6110 insertion in Rv2390c (Hypothetical protein) |
| 3492136–3493495 | 1359 | IS6110 insertion in Rv3113 (Probable phosphatase) |
| 3564263–3565622 | 1359 | IS6110 insertion in intergenic region between Rv3183 (Possible transcriptional regulatory protein) – TBFG_13208 (Conserved hypothetical protein) |
| 3831596–3831772 | 176 | Intergenic region between Rv3401 (Hypothetical protein) and Rv3402c (Hypothetical protein) |
| 3853062–3860408 | 2394 | TBFG_13461 (Hypothetical protein) – TBFG_13462 (Hypothetical protein) – TBFG_13463 (Hypothetical protein) – TBFG_134614 (Probable Transposase) – Intergenic region |
| Haarlem | ||
| 1071617–1072976 | 1359 | IS6110 insertion in Rv0963c (Conserved hypothetical protein) |
| 1714841–1716200 | 1359 | IS6110 insertion in mmpl12 (Transmembrane protein) |
| 1834511–1834569 | 58 | Rv1637c (Hypothetical protein) |
| 1973210–1973436 | 226 | PPE24 |
| 2606037–2607396 | 1359 | IS6110 insertion in Rv2336 (Hypothetical protein) |
| 4144939–4144997 | 58 | leuA (2-isopropylmalate synthase) |
| C | ||
| 4088473–4088705 | 232 | Rv3680 (Probable anion transporter ATPase) |
Gene names are according to Tuberculist when homologous to MTB H37Rv, if not, genes are named according to the annotation of the respective genome.